Detailed information NTG0384680

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: FLQ07_RS16220
• Genome accession: NZ_CP043501
• Coordinates: 3124617..3125396 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus paralicheniformis strain A4-3
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 3119617..3130396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FLQ07_RS16200 (FLQ07_16200)	trmFO	3120314..3121618 (+)	1305	WP_020451382.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
FLQ07_RS16205 (FLQ07_16205)	xerC	3121685..3122599 (+)	915	WP_035338771.1	tyrosine recombinase XerC	-
FLQ07_RS16210 (FLQ07_16210)	hslV	3122613..3123158 (+)	546	WP_020451384.1	ATP-dependent protease subunit HslV	-
FLQ07_RS16215 (FLQ07_16215)	hslU	3123175..3124578 (+)	1404	WP_020451385.1	HslU--HslV peptidase ATPase subunit	-
FLQ07_RS16220 (FLQ07_16220)	codY	3124617..3125396 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
FLQ07_RS16225 (FLQ07_16225)	flgB	3125747..3126136 (+)	390	WP_020451387.1	flagellar basal body rod protein FlgB	-
FLQ07_RS16230 (FLQ07_16230)	flgC	3126136..3126588 (+)	453	WP_025811385.1	flagellar basal body rod protein FlgC	-
FLQ07_RS16235 (FLQ07_16235)	fliE	3126602..3126919 (+)	318	WP_020451389.1	flagellar hook-basal body complex protein FliE	-
FLQ07_RS16240 (FLQ07_16240)	fliF	3126970..3128571 (+)	1602	WP_020451390.1	flagellar basal-body MS-ring/collar protein FliF	-
FLQ07_RS16245 (FLQ07_16245)	fliG	3128585..3129601 (+)	1017	WP_020451391.1	flagellar motor switch protein FliG	-
FLQ07_RS16250 (FLQ07_16250)	fliH	3129585..3130352 (+)	768	WP_020451392.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=384680 FLQ07_RS16220 WP_003181756.1 3124617..3125396(+) (codY) [Bacillus paralicheniformis strain A4-3]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=384680 FLQ07_RS16220 WP_003181756.1 3124617..3125396(+) (codY) [Bacillus paralicheniformis strain A4-3]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTTGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGTGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGATCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467