Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG570_RS05345 Genome accession   NZ_CP051497
Coordinates   1149053..1149313 (+) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-007     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1144053..1154313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG570_RS05325 (HG570_05330) proC 1145231..1146028 (+) 798 WP_202141444.1 pyrroline-5-carboxylate reductase -
  HG570_RS05330 (HG570_05335) - 1146073..1146838 (+) 766 Protein_1048 hypothetical protein -
  HG570_RS05335 (HG570_05340) - 1146850..1148760 (+) 1911 WP_202141445.1 toprim domain-containing protein -
  HG570_RS05340 (HG570_05345) - 1148750..1149052 (+) 303 WP_000649840.1 TrbC/VirB2 family protein -
  HG570_RS05345 (HG570_05350) comB3 1149053..1149313 (+) 261 WP_000602756.1 hypothetical protein Machinery gene
  HG570_RS05350 (HG570_05355) - 1149326..1151802 (+) 2477 Protein_1052 VirB4 family type IV secretion system protein -
  HG570_RS05360 (HG570_05360) - 1151795..1153729 (+) 1935 WP_202141447.1 type IA DNA topoisomerase -
  HG570_RS07840 - 1153729..1153857 (+) 129 WP_269434639.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=384598 HG570_RS05345 WP_000602756.1 1149053..1149313(+) (comB3) [Helicobacter pylori strain PUNO-007]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=384598 HG570_RS05345 WP_000602756.1 1149053..1149313(+) (comB3) [Helicobacter pylori strain PUNO-007]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
CTGGATAATTTCTTTTTTGAGCGCTTCTTTCTTGTTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATATTAGAATTTTTTGATGAAGATATTACAAACATTATCTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453