Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG571_RS04990 Genome accession   NZ_CP051496
Coordinates   1060017..1060277 (-) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-008     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1055017..1065277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG571_RS08080 - 1055451..1055579 (-) 129 WP_000243255.1 hypothetical protein -
  HG571_RS04980 (HG571_04975) - 1055579..1057513 (-) 1935 WP_202140397.1 type IA DNA topoisomerase -
  HG571_RS04985 (HG571_04980) - 1057506..1060004 (-) 2499 WP_202140398.1 VirB4 family type IV secretion system protein -
  HG571_RS04990 (HG571_04985) comB3 1060017..1060277 (-) 261 WP_000602756.1 hypothetical protein Machinery gene
  HG571_RS04995 (HG571_04990) - 1060278..1060580 (-) 303 WP_202140399.1 TrbC/VirB2 family protein -
  HG571_RS05005 (HG571_05000) - 1060570..1062484 (-) 1915 Protein_995 toprim domain-containing protein -
  HG571_RS05010 (HG571_05005) - 1062495..1063206 (-) 712 Protein_996 hypothetical protein -
  HG571_RS08005 - 1063338..1063457 (+) 120 Protein_997 IS1595 family transposase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=384557 HG571_RS04990 WP_000602756.1 1060017..1060277(-) (comB3) [Helicobacter pylori strain PUNO-008]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=384557 HG571_RS04990 WP_000602756.1 1060017..1060277(-) (comB3) [Helicobacter pylori strain PUNO-008]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453