Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG572_RS04115 Genome accession   NZ_CP051495
Coordinates   886840..887100 (-) Length   86 a.a.
NCBI ID   WP_187872444.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-009     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 881840..892100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG572_RS07850 - 882274..882402 (-) 129 WP_000243255.1 hypothetical protein -
  HG572_RS04105 (HG572_04100) - 882402..884336 (-) 1935 WP_202139291.1 type IA DNA topoisomerase -
  HG572_RS04110 (HG572_04105) - 884329..886827 (-) 2499 WP_202139292.1 VirB4 family type IV secretion system protein -
  HG572_RS04115 (HG572_04110) comB3 886840..887100 (-) 261 WP_187872444.1 virB3 type IV secretion protein Machinery gene
  HG572_RS04120 (HG572_04115) - 887101..887403 (-) 303 WP_000649851.1 TrbC/VirB2 family protein -
  HG572_RS04125 (HG572_04120) - 887393..889303 (-) 1911 WP_202139293.1 toprim domain-containing protein -
  HG572_RS04130 (HG572_04125) - 889314..890078 (-) 765 WP_202139294.1 hypothetical protein -
  HG572_RS07945 - 890145..890213 (-) 69 Protein_827 type I restriction endonuclease -
  HG572_RS04135 (HG572_04130) - 890231..890917 (+) 687 WP_202139295.1 phosphatase PAP2 family protein -
  HG572_RS04140 (HG572_04135) - 890954..891898 (-) 945 WP_202139296.1 COG2958 family protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10170.10 Da        Isoelectric Point: 4.6082

>NTDB_id=384514 HG572_RS04115 WP_187872444.1 886840..887100(-) (comB3) [Helicobacter pylori strain PUNO-009]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALVTMFYILEFFDEDITNIILANLMLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=384514 HG572_RS04115 WP_187872444.1 886840..887100(-) (comB3) [Helicobacter pylori strain PUNO-009]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTGTATGGCGTGGTGCTATTGGTAGCATTGG
TAACAATGTTTTACATATTAGAATTTTTTGATGAAGATATTACAAACATTATCTTGGCAAACCTAATGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453