Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG573_RS05745 Genome accession   NZ_CP051494
Coordinates   1233249..1233539 (+) Length   96 a.a.
NCBI ID   WP_202147096.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1228249..1238539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG573_RS05720 (HG573_05725) - 1229623..1230366 (+) 744 WP_001951723.1 carbonic anhydrase -
  HG573_RS05725 (HG573_05730) - 1230605..1231687 (-) 1083 WP_202147093.1 DUF874 family protein -
  HG573_RS05730 (HG573_05735) - 1231761..1232549 (+) 789 WP_202147094.1 integrase -
  HG573_RS05735 (HG573_05740) - 1232552..1232776 (+) 225 WP_021176077.1 hypothetical protein -
  HG573_RS05740 (HG573_05745) - 1232773..1233252 (+) 480 WP_202147095.1 hypothetical protein -
  HG573_RS05745 (HG573_05750) comB2 1233249..1233539 (+) 291 WP_202147096.1 TrbC/VirB2 family protein Machinery gene
  HG573_RS05750 (HG573_05755) comB3 1233549..1233812 (+) 264 WP_001177721.1 hypothetical protein Machinery gene
  HG573_RS05755 (HG573_05760) - 1233824..1234060 (+) 237 WP_202147097.1 hypothetical protein -
  HG573_RS05760 (HG573_05765) - 1234060..1236624 (+) 2565 Protein_1135 VirB4 family type IV secretion/conjugal transfer ATPase -
  HG573_RS05765 (HG573_05770) - 1236626..1236760 (+) 135 WP_202147098.1 type IV secretion system protein VirB7 -
  HG573_RS05770 (HG573_05775) - 1236753..1237919 (+) 1167 WP_202147099.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10953.26 Da        Isoelectric Point: 11.1589

>NTDB_id=384470 HG573_RS05745 WP_202147096.1 1233249..1233539(+) (comB2) [Helicobacter pylori strain PUNO-010]
MKKLRHFRKLIAFLGFSPLLLQADINTFFNSIEQQLQSPTGKGILMIIFIAIGIFVWKNLDRWKEILLTILGVVLGTLIF
FKAPALAQWFMTSVGN

Nucleotide


Download         Length: 291 bp        

>NTDB_id=384470 HG573_RS05745 WP_202147096.1 1233249..1233539(+) (comB2) [Helicobacter pylori strain PUNO-010]
ATGAAAAAATTAAGACATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTATTACAAGCGGATATAAATAC
ATTTTTTAATAGCATTGAACAACAACTCCAAAGCCCTACAGGTAAGGGCATTTTAATGATTATATTCATTGCTATTGGTA
TTTTTGTGTGGAAAAACTTAGATAGATGGAAAGAAATCTTATTAACTATTTTGGGAGTTGTTTTAGGAACGCTGATATTT
TTTAAAGCCCCAGCCTTAGCTCAATGGTTTATGACTAGTGTTGGTAACTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

59.77

90.625

0.542