Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HG579_RS05980 Genome accession   NZ_CP051493
Coordinates   1292200..1292973 (+) Length   257 a.a.
NCBI ID   WP_202133655.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-006     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1287200..1297973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG579_RS05975 (HG579_05970) hopL 1288487..1292185 (+) 3699 WP_202133654.1 Hop family outer membrane protein HopL -
  HG579_RS05980 (HG579_05975) proC 1292200..1292973 (+) 774 WP_202133655.1 pyrroline-5-carboxylate reductase Machinery gene
  HG579_RS05985 (HG579_05980) - 1293001..1293528 (+) 528 WP_097692262.1 Fic/DOC family protein -
  HG579_RS05990 (HG579_05985) ybeY 1293619..1294041 (-) 423 WP_202133656.1 rRNA maturation RNase YbeY -
  HG579_RS05995 (HG579_05990) - 1294094..1294588 (-) 495 WP_202133657.1 flavodoxin -
  HG579_RS06000 (HG579_05995) - 1294680..1295261 (-) 582 WP_202133658.1 DedA family protein -
  HG579_RS06005 (HG579_06000) ccoS 1295385..1295582 (+) 198 WP_001090939.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HG579_RS06010 (HG579_06005) - 1295610..1296584 (+) 975 WP_202133659.1 NAD(P)/FAD-dependent oxidoreductase -
  HG579_RS06015 (HG579_06010) - 1296591..1297751 (-) 1161 WP_202133660.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28171.94 Da        Isoelectric Point: 9.1280

>NTDB_id=384429 HG579_RS05980 WP_202133655.1 1292200..1292973(+) (proC) [Helicobacter pylori strain LIM-006]
MEILQFVGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVGFKALSDAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALNIIESFGNCVRVGNEEQVD
SSVATNGSALAFLSLVASGLKDAGIREGLSARDSLELVKMSFKGFAKLLEKERPEVIMEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=384429 HG579_RS05980 WP_202133655.1 1292200..1292973(+) (proC) [Helicobacter pylori strain LIM-006]
ATGGAAATCTTGCAGTTTGTCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAGATCTTATCCAAGCG
TTTTATTTTAGAGATTACTGGGCGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCCCAAATCG
TGCCTTATAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTATTGTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCTTTAGCTGGCGTGGGTTTTAAAGCTTTAAGCGATGCGATTAATTCTTT
GCATTACTTAAAATGCATGCCCAATATCGCGAGCAAGTTCGCCCTTTCTTCTACAGCGGTGTGTGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAGCAGGTGGAT
TCTAGCGTGGCGACAAACGGGAGCGCACTCGCTTTTTTAAGCTTGGTAGCGAGCGGTTTGAAAGATGCTGGTATTAGAGA
GGGCTTGAGTGCTAGAGATTCTTTAGAGTTGGTAAAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CAGAGGTGATCATGGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGAGGAGCGTTTATAAAAGCATGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

36.614

98.833

0.362