Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CVCAS_RS01310 Genome accession   NC_017486
Coordinates   246945..248780 (+) Length   611 a.a.
NCBI ID   WP_003131178.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis CV56     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 241945..253780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVCAS_RS01295 (CVCAS_0239) - 243966..245243 (-) 1278 WP_003131173.1 NAD(P)/FAD-dependent oxidoreductase -
  CVCAS_RS01300 (CVCAS_0240) - 245384..246211 (+) 828 WP_003131174.1 NAD(P)H-hydrate dehydratase -
  CVCAS_RS01305 (CVCAS_0242) - 246361..246774 (+) 414 WP_003131176.1 DUF1398 domain-containing protein -
  CVCAS_RS01310 (CVCAS_0243) rcrP 246945..248780 (+) 1836 WP_003131178.1 ABC transporter ATP-binding protein Regulator
  CVCAS_RS01315 (CVCAS_0244) rcrQ 248777..250654 (+) 1878 WP_003131179.1 ABC transporter ATP-binding protein Regulator
  CVCAS_RS01320 (CVCAS_0245) - 250751..251404 (+) 654 WP_003131181.1 YcjF family protein -
  CVCAS_RS01325 (CVCAS_0246) - 251450..252469 (-) 1020 WP_003131182.1 Gfo/Idh/MocA family oxidoreductase -
  CVCAS_RS13235 (CVCAS_0247) - 252453..252620 (-) 168 WP_003131184.1 hypothetical protein -
  CVCAS_RS01330 (CVCAS_0248) - 252808..253284 (-) 477 WP_003131187.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 68173.10 Da        Isoelectric Point: 8.1160

>NTDB_id=38431 CVCAS_RS01310 WP_003131178.1 246945..248780(+) (rcrP) [Lactococcus lactis subsp. lactis CV56]
MLTIGRRYLNFWPVFWALFLLVIQVVTNLWVPTITANIINKGIGQSDMKYIWFMGLIMLFVSLASWLSAIGNVYFASKQS
QGLGLKLRHDLFKKVLFMDERNFQEFGDATLITRTTNDVTQLQNVFQTMLRMMLMAPMMLIGSIFMAWKLSHDLLLVFLI
ALPILTLAVVINIAISMPRFRSMQTKVDKINLIFQQGLTGVRVIRAFRRDQYEIDKFDEANRDLTHTSQVVLTTIAMLMP
IMTVILSFTNIGIVWFGAHLISKNMMEMGSLVAFLTYATQILMSFMQLSAVAVMVPRAQVSAVRVREILESKDKITDENS
SISVEALKRQRLSSDGNDKLSESNSVRNSLALNHVSFKFDEAKRQALSDLSVNVAAGQTLAIIGGTGSGKSTILNLIARL
IDPTNGSVTIDGTDIRQISQYDLHEKVSFTQQKAQLFLGTVRSNLQFGKSDATDEEMWQALEIAQAADFVREQGGLELAV
EQNGANFSGGQKQRISIARTLIKEAEIYLFDDSFSALDFATDRQLRTAINHSEKHKNKIKVIVAQRIATVMSADQILVLE
NGIAAGLGTHESLAKSCPQYQETMQSQLSDDDLVKMGVSIAHLTARGGDDQ

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=38431 CVCAS_RS01310 WP_003131178.1 246945..248780(+) (rcrP) [Lactococcus lactis subsp. lactis CV56]
ATGCTAACGATTGGAAGGCGATATTTAAATTTTTGGCCTGTATTTTGGGCACTTTTTTTGTTAGTTATTCAAGTTGTGAC
TAATCTTTGGGTTCCAACGATTACAGCGAATATTATCAATAAAGGCATTGGTCAATCTGATATGAAATATATCTGGTTTA
TGGGTCTAATTATGCTTTTCGTTTCTCTGGCCAGTTGGCTTTCGGCAATTGGAAATGTTTATTTTGCTTCCAAACAATCT
CAAGGATTGGGCTTAAAATTACGCCATGATTTATTTAAGAAAGTTTTATTCATGGACGAGCGCAACTTTCAGGAATTTGG
TGATGCAACTTTAATTACACGTACAACAAATGATGTGACTCAATTGCAAAATGTCTTTCAAACGATGTTACGAATGATGC
TCATGGCGCCAATGATGCTCATTGGTTCTATTTTCATGGCTTGGAAATTATCACATGATTTACTGCTGGTTTTTTTGATT
GCCCTGCCTATTTTAACTTTGGCTGTCGTTATTAATATTGCTATTTCCATGCCACGGTTTCGGTCAATGCAAACAAAAGT
TGATAAAATTAATCTGATTTTTCAACAAGGCTTGACTGGTGTTCGGGTGATTCGTGCTTTTAGACGAGACCAATATGAAA
TTGATAAATTTGATGAGGCTAACCGTGATTTGACACATACCAGTCAAGTGGTTTTGACGACGATTGCGATGTTAATGCCA
ATTATGACAGTTATTCTCAGTTTTACAAATATTGGAATTGTTTGGTTTGGCGCTCATCTTATCAGTAAAAATATGATGGA
AATGGGTTCATTAGTTGCCTTTTTGACCTATGCCACACAGATTTTGATGTCATTTATGCAATTATCAGCAGTTGCTGTCA
TGGTGCCACGAGCTCAGGTTTCAGCTGTTCGAGTTCGAGAAATTTTAGAATCTAAAGATAAAATTACTGATGAAAATTCG
AGCATATCCGTAGAGGCGCTAAAGCGCCAACGGCTATCCTCTGATGGAAATGACAAGTTGTCTGAAAGCAATTCTGTCCG
CAATTCTCTAGCTCTTAATCATGTATCTTTCAAATTTGATGAAGCAAAAAGACAAGCGCTAAGTGACTTGTCAGTAAATG
TAGCAGCTGGTCAGACCTTAGCAATTATTGGGGGGACTGGTTCTGGTAAATCAACGATTTTGAATTTGATTGCCAGATTA
ATTGACCCAACAAATGGAAGTGTCACAATTGATGGTACTGATATTCGCCAAATTTCACAGTATGACTTGCATGAAAAAGT
TTCTTTTACGCAACAAAAAGCTCAACTTTTTTTGGGAACTGTCCGCTCGAATCTTCAATTTGGGAAAAGTGATGCAACAG
ATGAAGAAATGTGGCAAGCTTTGGAAATTGCACAAGCTGCTGATTTCGTTCGTGAACAAGGTGGACTTGAGCTGGCGGTC
GAACAAAATGGCGCAAATTTCTCTGGTGGTCAAAAACAAAGAATTTCGATTGCTAGAACCTTGATTAAAGAGGCAGAAAT
TTATCTATTTGACGATTCATTTTCGGCCTTGGACTTTGCTACTGACAGACAATTACGAACAGCTATTAATCATTCGGAAA
AACATAAAAATAAAATCAAGGTGATTGTGGCTCAAAGAATCGCAACCGTTATGTCAGCTGACCAAATCTTAGTTTTAGAA
AATGGAATTGCCGCAGGACTTGGTACTCATGAAAGTTTGGCAAAATCCTGTCCGCAATATCAAGAAACAATGCAATCTCA
ACTCTCGGATGATGATTTGGTCAAGATGGGTGTTTCAATTGCACATTTGACCGCCAGAGGAGGTGATGACCAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(367-513)

ABC transporter transmembrane region (ABC_membrane)

(15-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.349

99.509

0.362

Multiple sequence alignment