Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   CVCAS_RS00495 Genome accession   NC_017486
Coordinates   86814..88073 (-) Length   419 a.a.
NCBI ID   WP_003132263.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis CV56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 81814..93073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVCAS_RS00470 (CVCAS_0077) - 82393..82695 (-) 303 WP_003132256.1 hypothetical protein -
  CVCAS_RS12710 (CVCAS_0078) - 82697..82864 (-) 168 WP_003132257.1 lactococcin family bacteriocin -
  CVCAS_RS00475 (CVCAS_0079) rpmG 83428..83577 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  CVCAS_RS00480 (CVCAS_0080) rpmF 83607..83780 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  CVCAS_RS00485 (CVCAS_0081) - 84144..85925 (+) 1782 WP_014570336.1 heavy metal translocating P-type ATPase -
  CVCAS_RS00490 (CVCAS_0082) spo0J 85974..86759 (-) 786 WP_014570337.1 ParB/RepB/Spo0J family partition protein Regulator
  CVCAS_RS00495 (CVCAS_0083) rarA 86814..88073 (-) 1260 WP_003132263.1 replication-associated recombination protein A Machinery gene
  CVCAS_RS00500 (CVCAS_0084) - 88117..88605 (-) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  CVCAS_RS00505 (CVCAS_0085) - 88757..89224 (+) 468 WP_003132265.1 DUF3013 family protein -
  CVCAS_RS00510 (CVCAS_0086) - 89254..90807 (+) 1554 WP_003132266.1 ABC-F family ATP-binding cassette domain-containing protein -
  CVCAS_RS00515 (CVCAS_0087) - 90938..91222 (+) 285 WP_010905114.1 hypothetical protein -
  CVCAS_RS00520 (CVCAS_0088) - 91259..91747 (+) 489 WP_003132268.1 YdeI/OmpD-associated family protein -
  CVCAS_RS00525 (CVCAS_0089) prmA 91765..92718 (+) 954 WP_003132270.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46714.02 Da        Isoelectric Point: 5.5975

>NTDB_id=38429 CVCAS_RS00495 WP_003132263.1 86814..88073(-) (rarA) [Lactococcus lactis subsp. lactis CV56]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQVILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKECGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=38429 CVCAS_RS00495 WP_003132263.1 86814..88073(-) (rarA) [Lactococcus lactis subsp. lactis CV56]
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCTTTTCGGACATTTAATGCAACGACAGATACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGCCAACTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAGTTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAGCCAGAAGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAATGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
GACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTCCTTTCCTCAGAAGAACATCATGTCACTTTAG
ATGATATGGAAAATTCTTTACAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAGGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)

AAA C-terminal domain (AAA_assoc_2)

(173-246)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.005

100

0.594