Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CVOLT_RS04750 Genome accession   NZ_CP043428
Coordinates   899654..900388 (-) Length   244 a.a.
NCBI ID   WP_039665676.1    Uniprot ID   A0AAE5YGF1
Organism   Campylobacter volucris strain LMG 24380     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 894654..905388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVOLT_RS04710 (CVOLT_0933) holA 895344..896309 (+) 966 WP_039665668.1 DNA polymerase III subunit delta -
  CVOLT_RS04715 (CVOLT_0934) rpsF 896402..896776 (+) 375 WP_039665669.1 30S ribosomal protein S6 -
  CVOLT_RS04720 (CVOLT_0935) - 896780..897301 (+) 522 WP_039665670.1 single-stranded DNA-binding protein -
  CVOLT_RS04725 (CVOLT_0936) rpsR 897312..897572 (+) 261 WP_039665671.1 30S ribosomal protein S18 -
  CVOLT_RS04730 (CVOLT_0937) - 897620..898255 (+) 636 WP_039665672.1 MarC family protein -
  CVOLT_RS04735 (CVOLT_0938) - 898221..898664 (-) 444 WP_039665673.1 hypothetical protein -
  CVOLT_RS04740 (CVOLT_0939) - 898661..899380 (-) 720 WP_039665674.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CVOLT_RS04745 (CVOLT_0940) - 899364..899657 (-) 294 WP_039665675.1 hypothetical protein -
  CVOLT_RS04750 (CVOLT_0941) proC 899654..900388 (-) 735 WP_039665676.1 pyrroline-5-carboxylate reductase Machinery gene
  CVOLT_RS04755 (CVOLT_0942) fliW 900388..900786 (-) 399 WP_039665677.1 flagellar assembly protein FliW -
  CVOLT_RS04760 (CVOLT_0943) bamD 900961..901617 (+) 657 WP_039665678.1 outer membrane protein assembly factor BamD -
  CVOLT_RS04765 (CVOLT_0944) lon 901617..903995 (+) 2379 WP_039665679.1 endopeptidase La -
  CVOLT_RS08150 (CVOLT_0945) - 904010..905386 (-) 1377 WP_039665680.1 MCP-domain energy taxis signal transduction protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26856.33 Da        Isoelectric Point: 8.8840

>NTDB_id=384008 CVOLT_RS04750 WP_039665676.1 899654..900388(-) (proC) [Campylobacter volucris strain LMG 24380]
MSEIYILGNGAMANAIALGLEDKYEITIVARDESKNIISKPNIKTISYKEFNLEGKNVILAFKPFALNDVAKMLKGEARW
VVSVLANTTFEQLHVIKAQDYIKIMPNIAAKFKSSTTAYLMEKSLFKDEILQVLNTFGKSFLLQNEKEFDIAMVLSGCAP
AFLALVAEALANAGVRGGLKNDLSYNLTKATFESFSALFNQEHPALIKEKICSPAGVTIKGIEALEKRALRAAFFEAFLA
SSQK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=384008 CVOLT_RS04750 WP_039665676.1 899654..900388(-) (proC) [Campylobacter volucris strain LMG 24380]
ATGTCTGAAATTTATATTTTAGGAAATGGAGCTATGGCAAATGCTATAGCATTGGGGTTAGAAGATAAATATGAAATTAC
AATTGTCGCTAGAGATGAAAGTAAAAATATAATATCTAAACCAAACATTAAAACAATTTCCTATAAAGAATTTAATTTAG
AAGGTAAAAATGTAATTTTAGCTTTTAAACCTTTTGCGTTAAATGATGTTGCAAAAATGTTAAAAGGTGAGGCAAGATGG
GTTGTTTCTGTTTTGGCAAATACTACTTTTGAACAACTTCATGTCATAAAAGCACAAGATTATATAAAAATAATGCCTAA
TATTGCTGCGAAATTTAAATCTTCCACAACTGCGTATTTAATGGAAAAATCTTTATTTAAAGATGAAATCTTGCAAGTGC
TTAATACTTTTGGTAAATCTTTTTTGCTTCAAAATGAAAAAGAATTTGATATTGCTATGGTTTTAAGTGGTTGTGCTCCT
GCTTTTTTAGCTTTGGTAGCAGAAGCTTTAGCTAATGCTGGAGTAAGAGGTGGATTGAAAAATGATTTAAGTTATAATCT
AACCAAGGCTACTTTTGAAAGCTTTAGTGCCTTGTTTAATCAAGAGCATCCAGCCTTGATAAAAGAAAAAATTTGCTCTC
CAGCAGGAGTAACTATAAAAGGAATCGAAGCTTTGGAAAAAAGAGCTTTAAGGGCTGCATTTTTTGAAGCTTTTTTAGCT
AGTTCTCAAAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-86)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(146-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.678

99.18

0.582

Multiple sequence alignment