Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   CSPT_RS05685 Genome accession   NZ_CP043427
Coordinates   1128727..1129473 (-) Length   248 a.a.
NCBI ID   WP_089182709.1    Uniprot ID   -
Organism   Campylobacter sputorum subsp. sputorum strain LMG 7795     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1123727..1134473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSPT_RS05665 (CSPT_1114) speA 1124292..1126133 (+) 1842 WP_089182705.1 biosynthetic arginine decarboxylase -
  CSPT_RS05670 (CSPT_1115) cysE 1126137..1126829 (+) 693 WP_089182706.1 serine O-acetyltransferase -
  CSPT_RS05675 (CSPT_1116) - 1126856..1127455 (+) 600 WP_089182707.1 hypothetical protein -
  CSPT_RS05680 (CSPT_1117) - 1127507..1128658 (+) 1152 WP_089182708.1 pyridoxal phosphate-dependent aminotransferase -
  CSPT_RS05685 (CSPT_1118) proC 1128727..1129473 (-) 747 WP_089182709.1 pyrroline-5-carboxylate reductase Machinery gene
  CSPT_RS05690 (CSPT_1119) fliW 1129478..1129867 (-) 390 WP_089182710.1 flagellar assembly protein FliW -
  CSPT_RS05695 (CSPT_1120) - 1130011..1130655 (+) 645 WP_089182711.1 outer membrane protein assembly factor BamD -
  CSPT_RS05700 (CSPT_1121) lon 1130664..1133066 (+) 2403 WP_235610052.1 endopeptidase La -

Sequence


Protein


Download         Length: 248 a.a.        Molecular weight: 26772.11 Da        Isoelectric Point: 7.5876

>NTDB_id=383993 CSPT_RS05685 WP_089182709.1 1128727..1129473(-) (proC) [Campylobacter sputorum subsp. sputorum strain LMG 7795]
MEEIFILGNGAMATAMAFGLKDKYSIVLVGRNRQKLENLAKQGFKTELYGDKFDINNKFIILAFKPYALDSVSQILSGKA
DLIISVLATSSLEEIKNQISSNRYIKAMPNIAAKFKSSITPFFSKDCQNEDEVILSTFGEICRVDSEDELNMAMAISGCA
PAYLALVAEAMACGCVSKGLKKDIAHSITAGVFKSISALLKESHPALIKESVCSPAGTTIEGVNVLEEHSVRSAFIKAIK
ASIDKASK

Nucleotide


Download         Length: 747 bp        

>NTDB_id=383993 CSPT_RS05685 WP_089182709.1 1128727..1129473(-) (proC) [Campylobacter sputorum subsp. sputorum strain LMG 7795]
ATGGAAGAAATTTTTATACTTGGTAATGGAGCTATGGCGACTGCTATGGCTTTTGGATTAAAAGATAAATATAGCATTGT
TTTGGTTGGCAGAAACAGACAAAAATTAGAAAATTTAGCAAAACAAGGCTTTAAAACAGAGCTTTATGGAGATAAATTTG
ATATAAATAATAAATTTATAATACTAGCTTTTAAACCTTACGCTCTTGATAGTGTTAGTCAAATTTTAAGCGGAAAAGCT
GATTTGATTATAAGTGTTTTGGCTACATCTTCTCTTGAAGAGATAAAAAATCAAATTTCTTCAAATAGATATATAAAAGC
TATGCCAAATATAGCGGCTAAATTTAAATCTTCCATAACTCCTTTTTTCTCAAAAGATTGCCAAAATGAAGATGAGGTTA
TTTTATCTACATTTGGTGAAATTTGTAGAGTCGATAGTGAAGATGAGCTAAATATGGCAATGGCGATAAGTGGCTGTGCA
CCGGCGTATTTGGCTTTGGTTGCTGAAGCTATGGCTTGTGGTTGTGTTAGTAAAGGGCTTAAAAAAGATATAGCTCATAG
TATTACCGCTGGTGTTTTTAAAAGTATATCAGCCCTGCTAAAAGAATCTCATCCAGCTCTTATAAAAGAGTCTGTTTGCT
CGCCTGCTGGAACTACTATAGAAGGTGTTAATGTCTTAGAGGAGCATTCAGTAAGATCTGCTTTTATAAAAGCTATCAAA
GCAAGTATAGATAAAGCGAGTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

51.452

97.177

0.5


Multiple sequence alignment