Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BSR23_RS16945 Genome accession   NZ_CP043421
Coordinates   3327757..3328482 (+) Length   241 a.a.
NCBI ID   WP_077671984.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MVP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3322757..3333482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR23_RS16930 (BSR23_016930) - 3323862..3326183 (+) 2322 WP_077671986.1 Tex family protein -
  BSR23_RS16935 (BSR23_016935) - 3326317..3326781 (-) 465 WP_005459035.1 hypothetical protein -
  BSR23_RS16940 (BSR23_016940) bioH 3326905..3327672 (-) 768 WP_176092062.1 pimeloyl-ACP methyl ester esterase BioH -
  BSR23_RS16945 (BSR23_016945) comF 3327757..3328482 (+) 726 WP_077671984.1 ComF family protein Machinery gene
  BSR23_RS16950 (BSR23_016950) nfuA 3328580..3329164 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  BSR23_RS16955 (BSR23_016955) nudE 3329385..3329954 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  BSR23_RS16960 (BSR23_016960) cysQ 3329996..3330823 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BSR23_RS16965 (BSR23_016965) - 3331109..3331870 (-) 762 WP_042772205.1 type II secretion system protein N -
  BSR23_RS16970 (BSR23_016970) - 3331872..3332363 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27569.77 Da        Isoelectric Point: 9.3588

>NTDB_id=383939 BSR23_RS16945 WP_077671984.1 3327757..3328482(+) (comF) [Vibrio parahaemolyticus strain MVP1]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCGHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSNILARHLAGHLNVRFDN
HVFRRVKHAQSQRGNKKSSRELNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=383939 BSR23_RS16945 WP_077671984.1 3327757..3328482(+) (comF) [Vibrio parahaemolyticus strain MVP1]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGGTCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCAACATACTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCTCAGTCGCAGCGCGGGAACAAGAAATCCAGCCGAGAACTGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

47.899

98.755

0.473

Multiple sequence alignment