Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   HC658_RS08065 Genome accession   NZ_CP051466
Coordinates   1544860..1545309 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain UCMB5021     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539860..1550309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC658_RS08025 (HC658_15820) ctaE 1539879..1540502 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  HC658_RS08030 (HC658_15830) ctaF 1540505..1540837 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  HC658_RS08035 (HC658_15840) ctaG 1540864..1541757 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  HC658_RS08040 (HC658_15850) ylbA 1541789..1542151 (-) 363 WP_003232238.1 YugN family protein -
  HC658_RS08045 (HC658_15860) ylbB 1542291..1542737 (+) 447 WP_003221362.1 CBS domain-containing protein -
  HC658_RS08050 (HC658_15870) ylbC 1542821..1543861 (+) 1041 WP_032721504.1 CAP domain-containing protein -
  HC658_RS08055 (HC658_15880) ylbD 1544091..1544489 (+) 399 WP_003232233.1 YlbD family protein -
  HC658_RS08060 (HC658_15890) ylbE 1544505..1544744 (+) 240 WP_003232231.1 YlbE-like family protein -
  HC658_RS08065 (HC658_15900) ylbF 1544860..1545309 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  HC658_RS08070 (HC658_15910) ylbG 1545364..1545636 (+) 273 WP_009967171.1 YlbG family protein -
  HC658_RS08075 (HC658_15930) rsmD 1545959..1546513 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HC658_RS08080 (HC658_15940) coaD 1546518..1547003 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  HC658_RS08085 (HC658_15950) spoVV 1547014..1548240 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  HC658_RS08090 (HC658_15960) ylbK 1548421..1549203 (+) 783 WP_003232221.1 patatin family protein -
  HC658_RS08095 (HC658_15970) sepM 1549205..1550230 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=383869 HC658_RS08065 WP_003221370.1 1544860..1545309(+) (ylbF) [Bacillus subtilis subsp. subtilis strain UCMB5021]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=383869 HC658_RS08065 WP_003221370.1 1544860..1545309(+) (ylbF) [Bacillus subtilis subsp. subtilis strain UCMB5021]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment