Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HGI43_RS07945 Genome accession   NZ_CP051290
Coordinates   990154..990414 (+) Length   86 a.a.
NCBI ID   WP_000602758.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-001     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 985154..995414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI43_RS04705 (HGI43_04700) - 985238..987099 (-) 1862 Protein_925 dynamin family protein -
  HGI43_RS04710 (HGI43_04705) - 987170..987934 (+) 765 WP_202135306.1 hypothetical protein -
  HGI43_RS04715 (HGI43_04710) - 987945..989861 (+) 1917 WP_202135307.1 hypothetical protein -
  HGI43_RS04720 (HGI43_04715) - 989851..990153 (+) 303 WP_000649845.1 TrbC/VirB2 family protein -
  HGI43_RS07945 (HGI43_04720) comB3 990154..990414 (+) 261 WP_000602758.1 hypothetical protein Machinery gene
  HGI43_RS04725 (HGI43_04725) - 990427..991212 (+) 786 Protein_930 DNA transfer protein -
  HGI43_RS04730 (HGI43_04730) tnpA 991338..991754 (-) 417 WP_202135308.1 IS200/IS605 family transposase -
  HGI43_RS04735 (HGI43_04735) - 991791..993137 (+) 1347 WP_202135309.1 RNA-guided endonuclease TnpB family protein -
  HGI43_RS04745 (HGI43_04740) - 993176..994889 (+) 1714 Protein_933 type IV secretion system DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10184.06 Da        Isoelectric Point: 4.6082

>NTDB_id=383494 HGI43_RS07945 WP_000602758.1 990154..990414(+) (comB3) [Helicobacter pylori strain ASHA-001]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSTSFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=383494 HGI43_RS07945 WP_000602758.1 990154..990414(+) (comB3) [Helicobacter pylori strain ASHA-001]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCACTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453