Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HF584_RS03370 Genome accession   NZ_CP051165
Coordinates   696946..697719 (-) Length   257 a.a.
NCBI ID   WP_054190201.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NGA84b     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 691946..702719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF584_RS03335 (HF584_05550) - 692199..692969 (-) 771 WP_000473705.1 isoprenyl transferase -
  HF584_RS03340 (HF584_05545) frr 693342..693896 (-) 555 WP_054190200.1 ribosome recycling factor -
  HF584_RS03345 (HF584_05540) pyrH 693915..694637 (-) 723 WP_000057330.1 UMP kinase -
  HF584_RS03350 (HF584_05535) tsf 694774..695655 (-) 882 WP_000201387.1 translation elongation factor Ts -
  HF584_RS03355 (HF584_05530) - 695690..695803 (-) 114 WP_001789890.1 hypothetical protein -
  HF584_RS03360 (HF584_05525) rpsB 695837..696604 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  HF584_RS03365 (HF584_05520) - 696803..696895 (-) 93 WP_031788481.1 hypothetical protein -
  HF584_RS03370 (HF584_05515) codY 696946..697719 (-) 774 WP_054190201.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HF584_RS03375 (HF584_05510) hslU 697744..699147 (-) 1404 WP_054190202.1 ATP-dependent protease ATPase subunit HslU -
  HF584_RS03380 (HF584_05505) hslV 699213..699758 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  HF584_RS03385 (HF584_05500) xerC 699755..700651 (-) 897 WP_001015609.1 tyrosine recombinase XerC -
  HF584_RS03390 (HF584_05495) trmFO 701068..702375 (-) 1308 WP_054190203.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28771.19 Da        Isoelectric Point: 6.0680

>NTDB_id=382864 HF584_RS03370 WP_054190201.1 696946..697719(-) (codY) [Staphylococcus aureus strain NGA84b]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPTEYTERLM
EVKQTESNIDIDNALTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGMEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=382864 HF584_RS03370 WP_054190201.1 696946..697719(-) (codY) [Staphylococcus aureus strain NGA84b]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAACTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGCATTAACAGTTTTCCCGCCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTATGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428