Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PPE_RS11550 Genome accession   NC_014483
Coordinates   2621695..2623458 (+) Length   587 a.a.
NCBI ID   WP_013310357.1    Uniprot ID   -
Organism   Paenibacillus polymyxa E681     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2616695..2628458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPE_RS25765 (PPE_05800) - 2617287..2617391 (+) 105 WP_023988604.1 DUF6254 family protein -
  PPE_RS11530 (PPE_02370) dapA 2617715..2618599 (-) 885 WP_013310353.1 4-hydroxy-tetrahydrodipicolinate synthase -
  PPE_RS11535 (PPE_02371) - 2618699..2619580 (+) 882 WP_317890379.1 LysR family transcriptional regulator -
  PPE_RS11540 (PPE_02372) - 2619855..2620379 (+) 525 Protein_2289 NADPH dehydrogenase -
  PPE_RS24475 - 2620490..2620877 (+) 388 Protein_2290 hypothetical protein -
  PPE_RS11545 (PPE_02373) - 2621210..2621620 (+) 411 WP_013310356.1 MarR family transcriptional regulator -
  PPE_RS11550 (PPE_02374) rcrP 2621695..2623458 (+) 1764 WP_013310357.1 ABC transporter ATP-binding protein Regulator
  PPE_RS11555 (PPE_02375) rcrQ 2623451..2625304 (+) 1854 WP_013310358.1 ABC transporter ATP-binding protein Regulator
  PPE_RS11560 (PPE_02376) - 2625425..2625733 (+) 309 WP_013310359.1 hypothetical protein -
  PPE_RS24480 (PPE_05815) - 2626556..2626957 (+) 402 WP_013310361.1 IS5 family transposase -
  PPE_RS24485 - 2626972..2627394 (-) 423 Protein_2296 hypothetical protein -
  PPE_RS11570 (PPE_02380) - 2627508..2627960 (+) 453 WP_013310363.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64874.18 Da        Isoelectric Point: 7.7403

>NTDB_id=38244 PPE_RS11550 WP_013310357.1 2621695..2623458(+) (rcrP) [Paenibacillus polymyxa E681]
MLKIFKYFKKNEWMLVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAALILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYCIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIVNGHETTGEERVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYDQQALHNKIGYVPQRAVLFNGTVVSNVSYGDNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=38244 PPE_RS11550 WP_013310357.1 2621695..2623458(+) (rcrP) [Paenibacillus polymyxa E681]
ATGCTAAAGATATTCAAATATTTCAAGAAAAATGAATGGATGCTCGTGCTTTGCAGCCTAGCCTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTACCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCCGAGC
TGCTGATTCCCGGCAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTGGGCTACTTCGCGGCA
AAGGTGGCTGCAGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCGATGGAAGAGATGAA
CAGCTTTTCGACGGCAAGCCTCATTACCCGCTCCACGAACGATGTTACGCAGATTCAAACGGTGGTTGCGCTGGGGTTGC
AGGTGATCATCAAGGCACCGATTCTGGCCGTGTGGGCCATTGTGAAGATTGCGGATAAGAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTGGCTGCTCTGATCCTGATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTCCAGAGAATTCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTGGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTCGAGTTGACGAATACAAACCTGTTTGCGAACCGTTTAATGACAATG
ATTGGCCCAGGTATGACCTTTATTATGTCAGGTCTGAGTGTCTCTATCTATTGTATCGGCGCTTACCTGATTAACGGGGC
GGCCGTACCAGATCGCATCACGTTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATTCTGATGCCTCGCGCCTCGATCTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGCATCGTTAACGGGCATGAGACGACTGGAGAAGAGCGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCAGACGCGGAGGAGGCCGTGCTTCGCAACATTAGCTTTACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGAAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACAGAGGGAGAGGTACTCGTGGAT
GGTGTGAATGTCAGGAACTATGATCAGCAGGCACTCCATAACAAAATCGGATATGTCCCCCAGAGAGCTGTACTGTTCAA
CGGTACGGTGGTATCCAACGTTTCGTATGGCGATAACGGAAGAGCGGGAGCTTCGGAGAAACTCGTTAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAAATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAAATTTATATTTTCGATGATTCCTT
CTCGGCATTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGTCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACGATCAAAGACGCCGATCGGATTATCGTGCTAGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAAATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.254

100

0.533

Multiple sequence alignment