Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPPN135_RS05030 Genome accession   NC_017379
Coordinates   1056695..1056955 (-) Length   86 a.a.
NCBI ID   WP_000602755.1    Uniprot ID   -
Organism   Helicobacter pylori Puno135     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1051695..1061955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPN135_RS08605 (HPPN135_05170) - 1052129..1052257 (-) 129 WP_000243255.1 hypothetical protein -
  HPPN135_RS05020 - 1052257..1054191 (-) 1935 Protein_982 type IA DNA topoisomerase -
  HPPN135_RS05025 (HPPN135_05185) - 1054184..1056682 (-) 2499 WP_014537144.1 VirB4 family type IV secretion system protein -
  HPPN135_RS05030 (HPPN135_05190) comB3 1056695..1056955 (-) 261 WP_000602755.1 hypothetical protein Machinery gene
  HPPN135_RS05035 (HPPN135_05195) - 1056956..1057258 (-) 303 WP_000649843.1 TrbC/VirB2 family protein -
  HPPN135_RS05040 (HPPN135_05205) - 1057248..1059165 (-) 1918 Protein_986 hypothetical protein -
  HPPN135_RS05045 - 1059176..1059885 (-) 710 Protein_987 hypothetical protein -
  HPPN135_RS08540 - 1060016..1060219 (+) 204 Protein_988 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10188.05 Da        Isoelectric Point: 4.6082

>NTDB_id=38212 HPPN135_RS05030 WP_000602755.1 1056695..1056955(-) (comB3) [Helicobacter pylori Puno135]
MILNYVETINVREISKKEKFLKFNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=38212 HPPN135_RS05030 WP_000602755.1 1056695..1056955(-) (comB3) [Helicobacter pylori Puno135]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGTTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATCATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

43.678

100

0.442