Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   FWK61_RS08350 Genome accession   NZ_CP042992
Coordinates   1830636..1831163 (-) Length   175 a.a.
NCBI ID   WP_011608418.1    Uniprot ID   A0A9Q6P3A6
Organism   Histophilus somni strain UOC-KLM-ATR-013     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1825636..1836163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK61_RS08335 (FWK61_08335) - 1828929..1829246 (-) 318 WP_012340547.1 DUF5374 domain-containing protein -
  FWK61_RS08340 (FWK61_08340) - 1829227..1829907 (-) 681 WP_132995094.1 DUF2572 family protein -
  FWK61_RS08345 (FWK61_08345) - 1829910..1830587 (-) 678 WP_011608419.1 type II secretion system protein J -
  FWK61_RS08350 (FWK61_08350) comN 1830636..1831163 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FWK61_RS08370 (FWK61_08370) pal 1831837..1832292 (-) 456 WP_041603993.1 peptidoglycan-associated lipoprotein Pal -
  FWK61_RS08375 (FWK61_08375) tolB 1832302..1833606 (-) 1305 WP_075320971.1 Tol-Pal system beta propeller repeat protein TolB -
  FWK61_RS08380 (FWK61_08380) tolA 1833634..1834689 (-) 1056 WP_075320972.1 cell envelope integrity protein TolA -
  FWK61_RS08385 (FWK61_08385) tolR 1834708..1835130 (-) 423 WP_011608414.1 colicin uptake protein TolR -
  FWK61_RS08390 (FWK61_08390) tolQ 1835198..1835881 (-) 684 WP_075320973.1 protein TolQ -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 20468.96 Da        Isoelectric Point: 9.6079

>NTDB_id=379992 FWK61_RS08350 WP_011608418.1 1830636..1831163(-) (comN) [Histophilus somni strain UOC-KLM-ATR-013]
MKALKGFTLLEILIVLLIISMTVTFSFPMWQTANTKMILEKEQNKLYIFIRELQARVENSNDIWFLIANRDLVSKRWCLV
AQPKNTDICDCLNPRSCNRNIPMKFYYPYFADKTMLISKVYYPREMTRLNGTRNTSTTTCFVLQSDQQRTVFSFFNVGSL
KLKGYQSLSACVNDH

Nucleotide


Download         Length: 528 bp        

>NTDB_id=379992 FWK61_RS08350 WP_011608418.1 1830636..1831163(-) (comN) [Histophilus somni strain UOC-KLM-ATR-013]
ATGAAAGCATTAAAGGGGTTTACTCTATTAGAAATATTGATTGTTTTACTGATTATCAGTATGACAGTAACATTTTCTTT
TCCCATGTGGCAAACAGCAAATACAAAAATGATTTTAGAAAAAGAGCAAAATAAACTCTATATTTTCATAAGGGAGCTAC
AAGCTCGAGTTGAAAATTCTAATGATATTTGGTTTTTAATTGCTAATCGTGATTTAGTGAGTAAGCGTTGGTGTCTGGTT
GCACAACCAAAAAACACAGATATATGTGATTGTTTAAATCCTCGCAGCTGTAATAGAAATATTCCGATGAAATTTTATTA
TCCTTATTTTGCAGATAAAACCATGTTAATCAGCAAAGTTTATTATCCTAGAGAAATGACTAGATTAAATGGTACAAGGA
ATACAAGTACGACGACTTGTTTTGTGTTGCAATCTGATCAGCAAAGAACAGTATTTTCGTTTTTTAATGTAGGATCTTTA
AAACTTAAAGGTTACCAATCGTTAAGTGCTTGCGTGAATGATCATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

53.293

95.429

0.509

Multiple sequence alignment