Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   FWK58_RS08250 Genome accession   NZ_CP042991
Coordinates   1830661..1831188 (-) Length   175 a.a.
NCBI ID   WP_011608418.1    Uniprot ID   A0A9Q6P3A6
Organism   Histophilus somni strain UOC-KLM-ATR-012     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1825661..1836188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK58_RS08235 (FWK58_08235) - 1828954..1829271 (-) 318 WP_012340547.1 DUF5374 domain-containing protein -
  FWK58_RS08240 (FWK58_08240) - 1829252..1829932 (-) 681 WP_075293666.1 DUF2572 family protein -
  FWK58_RS08245 (FWK58_08245) - 1829935..1830612 (-) 678 WP_081376624.1 type II secretion system protein J -
  FWK58_RS08250 (FWK58_08250) comN 1830661..1831188 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FWK58_RS08270 (FWK58_08270) pal 1831862..1832317 (-) 456 WP_075293668.1 peptidoglycan-associated lipoprotein Pal -
  FWK58_RS08275 (FWK58_08275) tolB 1832327..1833631 (-) 1305 WP_075293669.1 Tol-Pal system beta propeller repeat protein TolB -
  FWK58_RS08280 (FWK58_08280) tolA 1833659..1834714 (-) 1056 WP_075293670.1 cell envelope integrity protein TolA -
  FWK58_RS08285 (FWK58_08285) tolR 1834733..1835155 (-) 423 WP_011608414.1 colicin uptake protein TolR -
  FWK58_RS08290 (FWK58_08290) tolQ 1835223..1835906 (-) 684 WP_011608413.1 protein TolQ -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 20468.96 Da        Isoelectric Point: 9.6079

>NTDB_id=379968 FWK58_RS08250 WP_011608418.1 1830661..1831188(-) (comN) [Histophilus somni strain UOC-KLM-ATR-012]
MKALKGFTLLEILIVLLIISMTVTFSFPMWQTANTKMILEKEQNKLYIFIRELQARVENSNDIWFLIANRDLVSKRWCLV
AQPKNTDICDCLNPRSCNRNIPMKFYYPYFADKTMLISKVYYPREMTRLNGTRNTSTTTCFVLQSDQQRTVFSFFNVGSL
KLKGYQSLSACVNDH

Nucleotide


Download         Length: 528 bp        

>NTDB_id=379968 FWK58_RS08250 WP_011608418.1 1830661..1831188(-) (comN) [Histophilus somni strain UOC-KLM-ATR-012]
ATGAAAGCATTAAAGGGGTTTACTCTATTAGAAATATTGATTGTTTTACTGATTATCAGTATGACAGTAACATTTTCTTT
TCCCATGTGGCAAACAGCAAATACAAAAATGATTTTAGAAAAAGAGCAAAATAAACTCTATATTTTCATAAGGGAGTTAC
AAGCTCGAGTTGAAAATTCTAATGATATTTGGTTTTTAATTGCTAATCGTGATTTAGTGAGTAAGCGTTGGTGTCTGGTT
GCACAACCAAAAAACACAGATATATGTGATTGTTTAAATCCTCGCAGCTGTAATAGAAATATTCCGATGAAATTTTATTA
TCCTTATTTTGCAGATAAAACCATGTTAATCAGCAAAGTTTATTATCCTAGAGAAATGACTAGATTAAACGGTACAAGGA
ATACAAGTACGACGACTTGTTTTGTATTGCAATCTGATCAGCAAAGAACAGTATTTTCGTTTTTTAATGTAGGATCTTTA
AAACTTAAAGGTTACCAATCGTTAAGTGCTTGCGTGAATGATCATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

53.293

95.429

0.509

Multiple sequence alignment