Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   FWK48_RS08375 Genome accession   NZ_CP042987
Coordinates   1830613..1831140 (-) Length   175 a.a.
NCBI ID   WP_011608418.1    Uniprot ID   A0A9Q6P3A6
Organism   Histophilus somni strain UOC-KLM-ATR-08     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1825613..1836140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK48_RS08360 (FWK48_08360) - 1828906..1829223 (-) 318 WP_136121735.1 DUF5374 domain-containing protein -
  FWK48_RS08365 (FWK48_08365) - 1829204..1829884 (-) 681 WP_011608420.1 DUF2572 family protein -
  FWK48_RS08370 (FWK48_08370) - 1829887..1830564 (-) 678 WP_136121755.1 type II secretion system protein J -
  FWK48_RS08375 (FWK48_08375) comN 1830613..1831140 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FWK48_RS08395 (FWK48_08395) pal 1831815..1832270 (-) 456 WP_041603993.1 peptidoglycan-associated lipoprotein Pal -
  FWK48_RS08400 (FWK48_08400) tolB 1832280..1833584 (-) 1305 WP_075320971.1 Tol-Pal system beta propeller repeat protein TolB -
  FWK48_RS08405 (FWK48_08405) tolA 1833612..1834667 (-) 1056 WP_075320972.1 cell envelope integrity protein TolA -
  FWK48_RS08410 (FWK48_08410) tolR 1834686..1835108 (-) 423 WP_011608414.1 colicin uptake protein TolR -
  FWK48_RS08415 (FWK48_08415) tolQ 1835176..1835859 (-) 684 WP_011608413.1 protein TolQ -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 20468.96 Da        Isoelectric Point: 9.6079

>NTDB_id=379870 FWK48_RS08375 WP_011608418.1 1830613..1831140(-) (comN) [Histophilus somni strain UOC-KLM-ATR-08]
MKALKGFTLLEILIVLLIISMTVTFSFPMWQTANTKMILEKEQNKLYIFIRELQARVENSNDIWFLIANRDLVSKRWCLV
AQPKNTDICDCLNPRSCNRNIPMKFYYPYFADKTMLISKVYYPREMTRLNGTRNTSTTTCFVLQSDQQRTVFSFFNVGSL
KLKGYQSLSACVNDH

Nucleotide


Download         Length: 528 bp        

>NTDB_id=379870 FWK48_RS08375 WP_011608418.1 1830613..1831140(-) (comN) [Histophilus somni strain UOC-KLM-ATR-08]
ATGAAAGCATTAAAGGGGTTTACTCTATTAGAAATATTGATTGTTTTACTGATTATCAGTATGACAGTAACATTTTCTTT
TCCCATGTGGCAAACAGCAAATACAAAAATGATTTTAGAAAAAGAGCAAAATAAACTCTATATTTTCATAAGGGAGCTAC
AAGCTCGAGTTGAAAATTCTAATGATATTTGGTTTTTAATTGCTAATCGTGATTTAGTGAGTAAGCGTTGGTGTCTGGTT
GCACAACCAAAAAACACAGATATATGTGATTGTTTAAATCCTCGCAGCTGTAATAGAAATATTCCGATGAAATTTTATTA
TCCTTATTTTGCAGATAAAACCATGTTAATCAGCAAAGTTTATTATCCTAGAGAAATGACTAGATTAAACGGTACAAGGA
ATACAAGTACGACGACTTGTTTTGTATTGCAATCTGATCAGCAAAGAACAGTATTTTCGTTTTTTAATGTAGGATCTTTA
AAACTTAAAGGTTACCAATCGTTAAGTGCTTGCGTGAATGATCATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

53.293

95.429

0.509

Multiple sequence alignment