Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FED50_RS21955 Genome accession   NZ_CP042929
Coordinates   3940897..3941676 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain G1-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3915603..3977362 3940897..3941676 within 0


Gene organization within MGE regions


Location: 3915603..3977362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED50_RS21845 - 3916174..3917073 (-) 900 WP_000868217.1 polysaccharide deacetylase family protein -
  FED50_RS21850 pnp 3917225..3919363 (-) 2139 WP_000076737.1 polyribonucleotide nucleotidyltransferase -
  FED50_RS21855 rpsO 3919524..3919793 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  FED50_RS21860 ribF 3919894..3920865 (-) 972 WP_000766706.1 bifunctional riboflavin kinase/FAD synthetase -
  FED50_RS21865 truB 3920909..3921832 (-) 924 WP_000399352.1 tRNA pseudouridine(55) synthase TruB -
  FED50_RS21870 rbfA 3921919..3922275 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  FED50_RS21875 - 3922291..3922572 (-) 282 WP_000582363.1 DUF503 family protein -
  FED50_RS21880 infB 3922569..3924629 (-) 2061 WP_000036343.1 translation initiation factor IF-2 -
  FED50_RS21885 - 3924634..3924945 (-) 312 WP_001286523.1 YlxQ family RNA-binding protein -
  FED50_RS21890 - 3924946..3925218 (-) 273 WP_000071127.1 YlxR family protein -
  FED50_RS21895 nusA 3925230..3926336 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  FED50_RS21900 rimP 3926354..3926824 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  FED50_RS21905 - 3927161..3931462 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  FED50_RS21910 - 3931587..3933287 (-) 1701 WP_000814299.1 proline--tRNA ligase -
  FED50_RS21915 rseP 3933397..3934653 (-) 1257 WP_001090244.1 RIP metalloprotease RseP -
  FED50_RS21920 dxr 3934671..3935813 (-) 1143 WP_000790373.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  FED50_RS21925 cdsA 3935837..3936628 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  FED50_RS21930 uppS 3936646..3937422 (-) 777 WP_000971296.1 isoprenyl transferase -
  FED50_RS21935 frr 3937508..3938065 (-) 558 WP_000531501.1 ribosome recycling factor -
  FED50_RS21940 pyrH 3938068..3938790 (-) 723 WP_000042668.1 UMP kinase -
  FED50_RS21945 tsf 3938857..3939744 (-) 888 WP_001018578.1 translation elongation factor Ts -
  FED50_RS21950 rpsB 3939848..3940549 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  FED50_RS21955 codY 3940897..3941676 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FED50_RS21960 hslU 3941754..3943145 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  FED50_RS21965 hslV 3943168..3943710 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  FED50_RS21970 xerC 3943753..3944652 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  FED50_RS21975 trmFO 3944718..3946022 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FED50_RS21980 topA 3946071..3948149 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  FED50_RS21985 dprA 3948294..3949163 (-) 870 WP_000818060.1 DNA-processing protein DprA -
  FED50_RS21990 sucD 3949252..3950154 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  FED50_RS21995 sucC 3950174..3951334 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  FED50_RS22000 - 3951529..3952302 (-) 774 WP_001194265.1 ribonuclease HII -
  FED50_RS22005 ylqF 3952359..3953249 (-) 891 WP_000236704.1 ribosome biogenesis GTPase YlqF -
  FED50_RS22010 lepB 3953270..3953821 (-) 552 WP_000711853.1 signal peptidase I -
  FED50_RS22015 rplS 3953923..3954267 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  FED50_RS22020 trmD 3954414..3955148 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FED50_RS22025 rimM 3955148..3955663 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  FED50_RS22030 - 3955785..3956012 (-) 228 WP_000737401.1 KH domain-containing protein -
  FED50_RS22035 rpsP 3956027..3956299 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  FED50_RS22040 ffh 3956401..3957750 (-) 1350 WP_000863460.1 signal recognition particle protein -
  FED50_RS22045 - 3957763..3958095 (-) 333 WP_000891062.1 putative DNA-binding protein -
  FED50_RS22050 ftsY 3958229..3959218 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  FED50_RS22055 smc 3959234..3962803 (-) 3570 WP_088053795.1 chromosome segregation protein SMC -
  FED50_RS22060 rncS 3962950..3963687 (-) 738 WP_001146875.1 ribonuclease III -
  FED50_RS22065 acpP 3963746..3963979 (-) 234 WP_000786062.1 acyl carrier protein -
  FED50_RS22070 fabG 3964049..3964789 (-) 741 WP_000911773.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  FED50_RS22075 fabD 3964789..3965733 (-) 945 WP_000515899.1 ACP S-malonyltransferase -
  FED50_RS22080 plsX 3965748..3966740 (-) 993 WP_016125148.1 phosphate acyltransferase PlsX -
  FED50_RS22085 fapR 3966737..3967330 (-) 594 WP_000747348.1 transcription factor FapR -
  FED50_RS22090 recG 3967419..3969467 (-) 2049 WP_001000816.1 ATP-dependent DNA helicase RecG -
  FED50_RS22095 - 3969758..3971434 (-) 1677 WP_088053793.1 DAK2 domain-containing protein -
  FED50_RS22100 - 3971457..3971819 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  FED50_RS22105 rpmB 3972196..3972384 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  FED50_RS22110 spoVM 3972458..3972538 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  FED50_RS22115 - 3972605..3973285 (-) 681 WP_002026234.1 thiamine diphosphokinase -
  FED50_RS22120 rpe 3973354..3973998 (-) 645 WP_000589974.1 ribulose-phosphate 3-epimerase -
  FED50_RS22125 rsgA 3974001..3974882 (-) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  FED50_RS22130 pknB 3975129..3977102 (-) 1974 WP_000904747.1 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=379436 FED50_RS21955 WP_000421290.1 3940897..3941676(-) (codY) [Bacillus cereus strain G1-1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=379436 FED50_RS21955 WP_000421290.1 3940897..3941676(-) (codY) [Bacillus cereus strain G1-1]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment