Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HB729_RS26760 Genome accession   NZ_CP050333
Coordinates   5799348..5799872 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain DVT412     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5794348..5804872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB729_RS26745 (HB729_26805) aroB 5795476..5796582 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  HB729_RS26750 (HB729_26810) aroK 5796632..5797150 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HB729_RS26755 (HB729_26815) pilQ 5797162..5799294 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  HB729_RS26760 (HB729_26820) comL/pilP 5799348..5799872 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HB729_RS26765 (HB729_26825) pilO 5799869..5800492 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  HB729_RS26770 (HB729_26830) pilN 5800489..5801085 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  HB729_RS26775 (HB729_26835) pilM 5801085..5802149 (-) 1065 WP_023103573.1 type IV pilus assembly protein PilM Machinery gene
  HB729_RS26780 (HB729_26840) - 5802334..5804805 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=379213 HB729_RS26760 WP_003116136.1 5799348..5799872(-) (comL/pilP) [Pseudomonas aeruginosa strain DVT412]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=379213 HB729_RS26760 WP_003116136.1 5799348..5799872(-) (comL/pilP) [Pseudomonas aeruginosa strain DVT412]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362