Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPF16_RS02190 Genome accession   NC_017368
Coordinates   428116..429291 (-) Length   391 a.a.
NCBI ID   WP_000060225.1    Uniprot ID   -
Organism   Helicobacter pylori F16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 423116..434291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF16_RS02155 (HPF16_0418) - 423433..423747 (+) 315 WP_000867999.1 hypothetical protein -
  HPF16_RS02160 (HPF16_0419) - 423725..424501 (+) 777 WP_000602376.1 RNA polymerase sigma factor FliA -
  HPF16_RS02165 (HPF16_0420) fliM 424494..425558 (+) 1065 WP_000763557.1 flagellar motor switch protein FliM -
  HPF16_RS02170 (HPF16_0421) fliY 425562..426425 (+) 864 WP_001150676.1 flagellar motor switch protein FliY -
  HPF16_RS02175 (HPF16_0422) - 426454..426990 (+) 537 WP_000963994.1 YhcH/YjgK/YiaL family protein -
  HPF16_RS02180 (HPF16_0423) - 426987..427484 (+) 498 WP_000780249.1 DUF2147 domain-containing protein -
  HPF16_RS02185 (HPF16_0424) fur 427504..427956 (-) 453 WP_000825003.1 ferric iron uptake transcriptional regulator -
  HPF16_RS02190 (HPF16_0425) rarA 428116..429291 (-) 1176 WP_000060225.1 replication-associated recombination protein A Machinery gene
  HPF16_RS02195 (HPF16_0426) - 429288..429659 (-) 372 WP_000332994.1 heat shock protein transcriptional repressor HspR -
  HPF16_RS02200 (HPF16_0427) - 429669..430535 (-) 867 WP_000045785.1 DnaJ family protein -
  HPF16_RS02205 (HPF16_0428) - 430703..431953 (+) 1251 WP_001199600.1 hypothetical protein -
  HPF16_RS02210 (HPF16_0429) - 431975..432841 (-) 867 WP_096000943.1 5'-3' exonuclease -
  HPF16_RS02215 (HPF16_0430) - 433067..433963 (-) 897 WP_000697520.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43862.45 Da        Isoelectric Point: 8.1225

>NTDB_id=37913 HPF16_RS02190 WP_000060225.1 428116..429291(-) (rarA) [Helicobacter pylori F16]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=37913 HPF16_RS02190 WP_000060225.1 428116..429291(-) (rarA) [Helicobacter pylori F16]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAACGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAAAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGATGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCATTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGACTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394

Multiple sequence alignment