Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPF57_RS02375 Genome accession   NC_017367
Coordinates   477971..479146 (-) Length   391 a.a.
NCBI ID   WP_000060199.1    Uniprot ID   -
Organism   Helicobacter pylori F57     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 472971..484146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF57_RS02340 (HPF57_0466) - 473289..473603 (+) 315 WP_000867999.1 hypothetical protein -
  HPF57_RS02345 (HPF57_0467) - 473581..474357 (+) 777 WP_000602384.1 RNA polymerase sigma factor FliA -
  HPF57_RS02350 (HPF57_0468) fliM 474350..475414 (+) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  HPF57_RS02355 (HPF57_0469) fliY 475418..476281 (+) 864 WP_001150678.1 flagellar motor switch protein FliY -
  HPF57_RS02360 (HPF57_0470) - 476309..476845 (+) 537 WP_000963960.1 YhcH/YjgK/YiaL family protein -
  HPF57_RS02365 (HPF57_0471) - 476842..477339 (+) 498 WP_000780257.1 DUF2147 domain-containing protein -
  HPF57_RS02370 (HPF57_0472) fur 477359..477811 (-) 453 WP_000825002.1 ferric iron uptake transcriptional regulator -
  HPF57_RS02375 (HPF57_0473) rarA 477971..479146 (-) 1176 WP_000060199.1 replication-associated recombination protein A Machinery gene
  HPF57_RS02380 (HPF57_0474) - 479143..479514 (-) 372 WP_000332994.1 heat shock protein transcriptional repressor HspR -
  HPF57_RS02385 (HPF57_0475) - 479524..480390 (-) 867 WP_000045788.1 DnaJ family protein -
  HPF57_RS02390 (HPF57_0476) - 480558..481808 (+) 1251 WP_001199603.1 hypothetical protein -
  HPF57_RS02395 (HPF57_0477) - 481830..482696 (-) 867 WP_096001236.1 5'-3' exonuclease -
  HPF57_RS02400 (HPF57_0478) - 482921..483817 (-) 897 WP_000697519.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43782.41 Da        Isoelectric Point: 7.7628

>NTDB_id=37874 HPF57_RS02375 WP_000060199.1 477971..479146(-) (rarA) [Helicobacter pylori F57]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIACMLERPILLFNATDFKLEGLRL
KLKNYQNTLLKPVIFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLASSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAF
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=37874 HPF57_RS02375 WP_000060199.1 477971..479146(-) (rarA) [Helicobacter pylori F57]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGTCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGTCCTCCTGGCGTGGGAAAAACAAGCTTGG
CTCAAATCATCGCTTGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGGTTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTATTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGCGCGCTAATAAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCTCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCCTGTTCACCCAAGTCTAACACGGCCTTT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.17

100

0.396

Multiple sequence alignment