Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPF57_RS01430 Genome accession   NC_017367
Coordinates   287337..287597 (+) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori F57     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 282337..292597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF57_RS01410 (HPF57_0278) - 283574..284308 (-) 735 Protein_269 DNA methyltransferase -
  HPF57_RS01415 (HPF57_0279) - 284353..285117 (+) 765 WP_000667755.1 hypothetical protein -
  HPF57_RS01420 (HPF57_0280) - 285128..287044 (+) 1917 WP_000332160.1 hypothetical protein -
  HPF57_RS01425 (HPF57_0281) - 287034..287336 (+) 303 WP_000649841.1 TrbC/VirB2 family protein -
  HPF57_RS01430 (HPF57_0282) comB3 287337..287597 (+) 261 WP_000602756.1 hypothetical protein Machinery gene
  HPF57_RS01435 (HPF57_0283) - 287610..290108 (+) 2499 WP_000478395.1 VirB4 family type IV secretion system protein -
  HPF57_RS01440 (HPF57_0284) - 290101..292035 (+) 1935 WP_041201912.1 type IA DNA topoisomerase -
  HPF57_RS08615 (HPF57_0285) - 292035..292166 (+) 132 WP_001185490.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=37865 HPF57_RS01430 WP_000602756.1 287337..287597(+) (comB3) [Helicobacter pylori F57]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=37865 HPF57_RS01430 WP_000602756.1 287337..287597(+) (comB3) [Helicobacter pylori F57]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGTGCTTCTTTCTTATTTGTATGGTCTCTATTATATGGCGTAGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment