Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPF57_RS00525 Genome accession   NC_017367
Coordinates   106820..107086 (+) Length   88 a.a.
NCBI ID   WP_001173705.1    Uniprot ID   A0A8J3FT93
Organism   Helicobacter pylori F57     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101820..112086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF57_RS00505 (HPF57_0102) - 103791..104549 (+) 759 WP_014535512.1 hypothetical protein -
  HPF57_RS00510 (HPF57_0103) - 104697..104990 (+) 294 WP_001160315.1 hypothetical protein -
  HPF57_RS00515 (HPF57_0104) - 104997..106520 (+) 1524 WP_000323327.1 hypothetical protein -
  HPF57_RS00520 (HPF57_0105) - 106517..106819 (+) 303 WP_014535513.1 hypothetical protein -
  HPF57_RS00525 (HPF57_0106) comB3 106820..107086 (+) 267 WP_001173705.1 hypothetical protein Machinery gene
  HPF57_RS00530 (HPF57_0107) - 107133..109502 (+) 2370 WP_014535514.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPF57_RS08645 - 109505..111127 (+) 1623 Protein_100 type IA DNA topoisomerase -
  HPF57_RS00540 (HPF57_0110) - 111090..111278 (-) 189 Protein_101 DUF1104 domain-containing protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10162.98 Da        Isoelectric Point: 4.8782

>NTDB_id=37860 HPF57_RS00525 WP_001173705.1 106820..107086(+) (comB3) [Helicobacter pylori F57]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=37860 HPF57_RS00525 WP_001173705.1 106820..107086(+) (comB3) [Helicobacter pylori F57]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8J3FT93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398

Multiple sequence alignment