Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FSZ17_RS16695 Genome accession   NZ_CP042593
Coordinates   3488993..3491359 (-) Length   788 a.a.
NCBI ID   WP_057771686.1    Uniprot ID   A0A5B8ZBA1
Organism   Cytobacillus dafuensis strain FJAT-25496     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3483993..3496359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSZ17_RS16680 (FSZ17_16675) dtd 3485603..3486043 (-) 441 WP_057771683.1 D-aminoacyl-tRNA deacylase -
  FSZ17_RS16685 (FSZ17_16680) - 3486056..3488242 (-) 2187 WP_057771684.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  FSZ17_RS16690 (FSZ17_16685) - 3488490..3489002 (-) 513 WP_057771685.1 adenine phosphoribosyltransferase -
  FSZ17_RS16695 (FSZ17_16690) recJ 3488993..3491359 (-) 2367 WP_057771686.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FSZ17_RS16700 (FSZ17_16695) - 3491778..3492677 (+) 900 WP_057771687.1 cation diffusion facilitator family transporter -
  FSZ17_RS16705 (FSZ17_16700) secDF 3492729..3494996 (-) 2268 WP_057771688.1 protein translocase subunit SecDF -
  FSZ17_RS16710 (FSZ17_16705) - 3495149..3495445 (-) 297 WP_057771689.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88601.32 Da        Isoelectric Point: 5.1010

>NTDB_id=378594 FSZ17_RS16695 WP_057771686.1 3488993..3491359(-) (recJ) [Cytobacillus dafuensis strain FJAT-25496]
MLHSKTRWIVRNSDEEKENQLVQDLNITPLLASLLVNRGLDIPESARYFLFDHDQEFHDPYLLNGMDIAVSRIKTAIEKQ
EPLLVFGDYDADGVTSTTVVMKTLRELGANVQFYIPNRFTEGYGPNIPAFQYAAEIGIKLIITVDTGIAAVNEAKAAKEL
GLELIITDHHEPGPELPEALSIIHPKLTNSQYPFRELAGVGVAFKLAHALYGGLPEHLLEIAAIGTIADLVSLKGENRLI
VKRGIKKLQSTKNVGLKALLKLNKVEASSINEETIGFLIAPRLNAAGRLDSADPAVDLLLTEDIDEAEAIAAEIDQMNKD
RQALVSEIAEQAIREVEEKYPINEHSVLVIGKEGWNAGVIGIVASKLVEKFYRPAIVLSYDKEKGLAKGSARSIMGFDLF
KNLSDSRDILPHFGGHPMAAGMTLQLEHVDELRMRLNQAAKTQLKDEDFIPVTTLDGSIPLHDIDLASIEEMQLLSPYGM
DNPKPKILIKDANISGMRKIGSDQNHLKMTIEHDGKTLDGVGFGLGTLHDHISPHSKISVIGELSINEWNNIRKPQIFLQ
DLAIDDWQLFDIRGIKRLGQLEELIPKEHSKWIVFNHDNANKFQSYTNEKVVTVSSIEEAAALNIEMENVILLDMPSSKE
LLANIFLGKNPARIYAHFYKEDSAYFSTIPTREHFKWFYAFLLKQGPLDIDRYGMEIAKYKGWSRETIDFMSQVFFELDF
VKINNGIISINETSQKRDLTESLVYEQRRAQFSLESDLLYSTYHQLKSWFDSVIQGSVKFEEAIKEWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=378594 FSZ17_RS16695 WP_057771686.1 3488993..3491359(-) (recJ) [Cytobacillus dafuensis strain FJAT-25496]
ATGTTACATTCAAAAACAAGATGGATTGTTCGGAATTCTGATGAAGAAAAGGAAAATCAATTAGTACAAGATTTAAATAT
TACTCCTCTCCTGGCTTCTCTACTAGTTAATCGGGGATTAGATATACCCGAATCAGCAAGGTATTTTTTATTTGATCATG
ATCAAGAATTTCATGATCCTTATTTATTAAATGGTATGGATATAGCAGTATCACGGATAAAAACGGCGATAGAAAAGCAA
GAACCATTATTAGTATTTGGAGACTATGATGCAGATGGTGTTACAAGCACCACTGTCGTGATGAAAACTCTTAGAGAACT
TGGGGCCAATGTTCAGTTTTACATTCCCAACCGTTTTACAGAAGGATATGGACCGAATATTCCTGCTTTTCAATATGCAG
CAGAAATTGGAATAAAATTGATTATCACGGTTGATACAGGAATTGCTGCTGTAAATGAAGCAAAGGCAGCGAAAGAGCTT
GGTCTTGAATTAATTATTACGGATCACCACGAACCAGGACCTGAATTGCCTGAGGCACTTTCAATTATTCATCCCAAGCT
AACGAATAGCCAATATCCTTTTCGTGAGCTGGCTGGAGTGGGTGTCGCATTTAAATTAGCTCATGCTTTATACGGTGGAT
TACCTGAACATTTACTTGAAATTGCGGCCATTGGTACAATTGCAGATTTAGTATCGTTAAAAGGAGAAAATCGCTTAATT
GTAAAACGTGGAATTAAAAAATTACAGTCTACGAAAAATGTTGGTTTAAAAGCATTACTGAAATTAAATAAAGTAGAGGC
AAGTTCAATTAATGAAGAAACGATTGGTTTTCTTATTGCACCGCGCTTAAATGCTGCTGGAAGATTAGACAGCGCTGATC
CAGCTGTTGATTTGCTTTTAACAGAGGATATTGATGAAGCAGAGGCAATTGCAGCAGAGATTGATCAGATGAATAAGGAT
AGGCAGGCACTCGTAAGCGAAATAGCTGAGCAAGCTATTCGTGAAGTAGAGGAAAAGTATCCAATAAACGAACATTCCGT
TCTTGTCATTGGAAAAGAGGGCTGGAATGCAGGAGTAATTGGGATTGTTGCTTCAAAGCTTGTTGAAAAATTTTATCGTC
CTGCAATCGTATTAAGCTACGATAAAGAAAAAGGTCTGGCAAAGGGTTCTGCTCGCAGTATTATGGGTTTTGATTTATTT
AAGAATCTTTCCGATAGTAGAGATATTTTGCCACATTTCGGCGGCCATCCTATGGCTGCTGGAATGACTTTACAGCTTGA
GCATGTTGACGAACTGCGAATGAGATTAAATCAAGCAGCGAAAACCCAACTAAAAGATGAGGACTTTATTCCAGTAACGA
CTCTAGATGGAAGCATCCCTTTACATGATATTGACCTAGCTTCTATAGAGGAAATGCAGTTGCTGTCTCCTTATGGCATG
GATAATCCAAAACCGAAAATATTAATTAAAGATGCTAATATTTCTGGCATGAGAAAGATCGGTTCAGATCAAAACCATTT
GAAAATGACAATAGAACATGATGGCAAAACACTTGATGGTGTTGGCTTCGGGTTAGGAACTTTGCATGATCACATTTCTC
CACATTCAAAAATATCCGTAATCGGTGAACTTTCGATTAACGAATGGAATAATATTCGAAAGCCACAAATCTTTCTTCAA
GATTTAGCGATTGATGACTGGCAGCTTTTTGATATTAGAGGTATAAAACGTCTTGGGCAACTAGAAGAACTCATCCCAAA
GGAACATTCCAAGTGGATTGTTTTTAATCATGACAATGCAAATAAATTTCAATCATATACAAATGAAAAAGTAGTAACTG
TTAGTTCTATTGAAGAAGCAGCTGCATTAAATATAGAAATGGAAAATGTCATTTTATTGGATATGCCTTCATCAAAGGAA
CTGCTCGCTAATATATTTTTAGGGAAAAATCCAGCTAGAATATATGCACATTTTTATAAAGAAGATAGTGCTTACTTTAG
TACAATTCCGACACGTGAACATTTCAAATGGTTTTATGCTTTTTTATTGAAGCAAGGACCTCTTGATATTGATAGATATG
GAATGGAAATCGCTAAATATAAAGGCTGGAGCAGGGAAACAATTGACTTTATGTCACAGGTGTTTTTTGAACTAGATTTT
GTTAAAATAAACAATGGAATTATTTCCATAAATGAGACTTCACAAAAACGTGATTTAACAGAATCGCTTGTTTATGAGCA
AAGACGTGCACAGTTTTCTCTTGAAAGCGATTTATTGTATTCAACCTATCATCAGTTAAAAAGTTGGTTTGATTCAGTAA
TCCAAGGTTCTGTGAAATTTGAGGAGGCAATAAAAGAATGGACTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(84-226)

RecJ OB domain (RecJ_OB)

(456-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8ZBA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.351

98.477

0.525

Multiple sequence alignment