Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HB739_RS05225 Genome accession   NZ_CP050326
Coordinates   1130656..1131252 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain DVT423     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1125656..1136252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB739_RS05215 (HB739_05230) - 1126936..1129407 (-) 2472 WP_016562439.1 penicillin-binding protein 1A -
  HB739_RS05220 (HB739_05235) pilM 1129592..1130656 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HB739_RS05225 (HB739_05240) pilN 1130656..1131252 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HB739_RS05230 (HB739_05245) pilO 1131249..1131872 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HB739_RS05235 (HB739_05250) comL/pilP 1131869..1132393 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HB739_RS05240 (HB739_05255) pilQ 1132447..1134591 (+) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  HB739_RS05245 (HB739_05260) aroK 1134603..1135121 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=378553 HB739_RS05225 WP_003095839.1 1130656..1131252(+) (pilN) [Pseudomonas aeruginosa strain DVT423]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=378553 HB739_RS05225 WP_003095839.1 1130656..1131252(+) (pilN) [Pseudomonas aeruginosa strain DVT423]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369