Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPF32_RS04535 Genome accession   NC_017366
Coordinates   959033..960208 (+) Length   391 a.a.
NCBI ID   WP_000060210.1    Uniprot ID   -
Organism   Helicobacter pylori F32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 954033..965208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF32_RS04510 (HPF32_0882) - 954320..955216 (+) 897 WP_000697597.1 OriC activity response regulator -
  HPF32_RS04515 (HPF32_0883) - 955442..956308 (+) 867 WP_096001174.1 5'-3' exonuclease -
  HPF32_RS04520 (HPF32_0884) - 956371..957621 (-) 1251 WP_001199589.1 hypothetical protein -
  HPF32_RS04525 (HPF32_0885) - 957789..958655 (+) 867 WP_000045778.1 DnaJ family protein -
  HPF32_RS04530 (HPF32_0886) - 958665..959036 (+) 372 WP_000332994.1 heat shock protein transcriptional repressor HspR -
  HPF32_RS04535 (HPF32_0887) rarA 959033..960208 (+) 1176 WP_000060210.1 replication-associated recombination protein A Machinery gene
  HPF32_RS04540 (HPF32_0888) fur 960368..960820 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  HPF32_RS04545 (HPF32_0889) - 960840..961337 (-) 498 WP_000780273.1 DUF2147 domain-containing protein -
  HPF32_RS04550 (HPF32_0890) - 961334..961870 (-) 537 WP_000964060.1 YhcH/YjgK/YiaL family protein -
  HPF32_RS04555 (HPF32_0891) fliY 961898..962761 (-) 864 WP_001150687.1 flagellar motor switch protein FliY -
  HPF32_RS04560 (HPF32_0892) fliM 962765..963829 (-) 1065 WP_000763573.1 flagellar motor switch protein FliM -
  HPF32_RS04565 (HPF32_0893) - 963822..964589 (-) 768 WP_000602390.1 RNA polymerase sigma factor FliA -
  HPF32_RS04570 (HPF32_0894) - 964567..964881 (-) 315 WP_000868000.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43844.54 Da        Isoelectric Point: 8.5376

>NTDB_id=37837 HPF32_RS04535 WP_000060210.1 959033..960208(+) (rarA) [Helicobacter pylori F32]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQHTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSHSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=37837 HPF32_RS04535 WP_000060210.1 959033..960208(+) (rarA) [Helicobacter pylori F32]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGCAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCAACGGATTTCAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAACACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACCCTACAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTCATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTAGCACGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCCAACACAGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.538

100

0.389

Multiple sequence alignment