Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HB747_RS26875 Genome accession   NZ_CP050322
Coordinates   5774334..5775059 (+) Length   241 a.a.
NCBI ID   WP_004352162.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT729     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5769334..5780059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB747_RS26845 (HB747_26885) - 5769454..5770332 (-) 879 WP_003103323.1 allophanate hydrolase subunit 1 -
  HB747_RS26850 (HB747_26890) - 5770334..5771710 (-) 1377 WP_023114735.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  HB747_RS26855 (HB747_26895) - 5771721..5771969 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  HB747_RS26860 (HB747_26900) - 5772046..5772804 (-) 759 WP_174707612.1 5-oxoprolinase subunit PxpA -
  HB747_RS26865 (HB747_26905) - 5772922..5773848 (+) 927 WP_174707613.1 LysR family transcriptional regulator -
  HB747_RS26870 (HB747_26910) - 5773902..5774195 (+) 294 WP_003084806.1 hypothetical protein -
  HB747_RS26875 (HB747_26915) comF 5774334..5775059 (+) 726 WP_004352162.1 ComF family protein Machinery gene
  HB747_RS26880 (HB747_26920) - 5775101..5775421 (+) 321 WP_174707614.1 YfiM family lipoprotein -
  HB747_RS26885 (HB747_26925) - 5775489..5776247 (+) 759 WP_023114736.1 TOBE domain-containing protein -
  HB747_RS26890 (HB747_26930) - 5776309..5777283 (+) 975 WP_023114737.1 serine/threonine protein kinase -
  HB747_RS26895 (HB747_26935) rarD 5777488..5778384 (+) 897 WP_003103301.1 EamA family transporter RarD -
  HB747_RS26900 (HB747_26940) - 5779074..5779589 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27099.58 Da        Isoelectric Point: 11.0325

>NTDB_id=378192 HB747_RS26875 WP_004352162.1 5774334..5775059(+) (comF) [Pseudomonas aeruginosa strain DVT729]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATTEHLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=378192 HB747_RS26875 WP_004352162.1 5774334..5775059(+) (comF) [Pseudomonas aeruginosa strain DVT729]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCA
CCGAGCACCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.589

100

0.386