Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HB747_RS01920 Genome accession   NZ_CP050322
Coordinates   421352..421876 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain DVT729     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416352..426876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB747_RS01900 (HB747_01900) - 416419..418890 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  HB747_RS01905 (HB747_01905) pilM 419075..420139 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HB747_RS01910 (HB747_01910) pilN 420139..420735 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HB747_RS01915 (HB747_01915) pilO 420732..421355 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HB747_RS01920 (HB747_01920) comL/pilP 421352..421876 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HB747_RS01925 (HB747_01925) pilQ 421930..424074 (+) 2145 WP_023114914.1 type 4a pilus secretin PilQ Machinery gene
  HB747_RS01930 (HB747_01930) aroK 424086..424604 (+) 519 WP_174707079.1 shikimate kinase AroK -
  HB747_RS01935 (HB747_01935) aroB 424654..425760 (+) 1107 WP_003162482.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=378120 HB747_RS01920 WP_003095836.1 421352..421876(+) (comL/pilP) [Pseudomonas aeruginosa strain DVT729]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=378120 HB747_RS01920 WP_003095836.1 421352..421876(+) (comL/pilP) [Pseudomonas aeruginosa strain DVT729]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362