Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   HBL79_RS09055 Genome accession   NZ_CP050316
Coordinates   1874024..1874329 (+) Length   101 a.a.
NCBI ID   WP_035688436.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ESV-135     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1869024..1879329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBL79_RS09020 (HBL79_09020) tolB 1869845..1871134 (+) 1290 WP_233570698.1 Tol-Pal system beta propeller repeat protein TolB -
  HBL79_RS09025 (HBL79_09025) pal 1871145..1871597 (+) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  HBL79_RS09040 (HBL79_09040) comN 1872135..1872656 (+) 522 WP_017806950.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HBL79_RS09045 (HBL79_09045) comO 1872657..1873376 (+) 720 WP_035688438.1 type II secretion system protein J Machinery gene
  HBL79_RS09050 (HBL79_09050) - 1873378..1874043 (+) 666 WP_051128113.1 DUF2572 family protein -
  HBL79_RS09055 (HBL79_09055) comQ 1874024..1874329 (+) 306 WP_035688436.1 DUF5374 domain-containing protein Machinery gene
  HBL79_RS09060 (HBL79_09060) recC 1874341..1877745 (+) 3405 WP_035688434.1 exodeoxyribonuclease V subunit gamma -
  HBL79_RS09065 (HBL79_09065) - 1877783..1878601 (-) 819 WP_035688432.1 pyridoxal phosphatase -
  HBL79_RS09070 (HBL79_09070) araD 1878629..1879324 (-) 696 WP_035688430.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11846.74 Da        Isoelectric Point: 9.7195

>NTDB_id=378098 HBL79_RS09055 WP_035688436.1 1874024..1874329(+) (comQ) [Avibacterium paragallinarum strain ESV-135]
MILKPYRLLKYKGMNLFSLLVTLTLFSGIFLSVNQWLSHQRQSAVRIFQDLQAWSIANNQQQRRLMELDCQSQIEQNHII
FHISCDGNQVTVHYPTGNVRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=378098 HBL79_RS09055 WP_035688436.1 1874024..1874329(+) (comQ) [Avibacterium paragallinarum strain ESV-135]
ATGATTTTGAAACCTTATAGATTGTTAAAATATAAAGGAATGAATTTGTTTTCTTTGCTGGTGACTTTAACGTTGTTTAG
TGGTATTTTTCTCTCCGTTAATCAGTGGCTTTCACATCAGCGACAAAGTGCGGTGAGAATTTTCCAAGATTTACAAGCTT
GGTCTATTGCAAATAATCAACAGCAGCGTCGGCTTATGGAGCTAGATTGCCAGTCTCAAATTGAACAGAACCACATTATT
TTCCATATTTCTTGCGATGGAAATCAAGTTACAGTGCATTATCCCACTGGGAATGTACGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

44.318

87.129

0.386