Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPF30_RS06250 Genome accession   NC_017365
Coordinates   1284463..1284729 (-) Length   88 a.a.
NCBI ID   WP_001173704.1    Uniprot ID   -
Organism   Helicobacter pylori F30     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1279463..1289729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF30_RS06235 - 1280255..1280443 (+) 189 Protein_1200 DUF1104 domain-containing protein -
  HPF30_RS08535 - 1280406..1282038 (-) 1633 Protein_1201 type IA DNA topoisomerase -
  HPF30_RS06245 (HPF30_1207) - 1282041..1284416 (-) 2376 WP_014535262.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPF30_RS06250 comB3 1284463..1284729 (-) 267 WP_001173704.1 hypothetical protein Machinery gene
  HPF30_RS06255 (HPF30_1208) - 1284730..1284948 (-) 219 WP_014535263.1 hypothetical protein -
  HPF30_RS06260 (HPF30_1209) - 1285028..1286551 (-) 1524 WP_000323330.1 hypothetical protein -
  HPF30_RS06265 (HPF30_1210) - 1286558..1286851 (-) 294 WP_001160313.1 hypothetical protein -
  HPF30_RS08415 - 1286871..1287651 (-) 781 Protein_1207 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10175.03 Da        Isoelectric Point: 4.8782

>NTDB_id=37805 HPF30_RS06250 WP_001173704.1 1284463..1284729(-) (comB3) [Helicobacter pylori F30]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFILR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=37805 HPF30_RS06250 WP_001173704.1 1284463..1284729(-) (comB3) [Helicobacter pylori F30]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGTAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTATATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCATATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398

Multiple sequence alignment