Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FR741_RS14675 Genome accession   NZ_CP042451
Coordinates   3107206..3107931 (+) Length   241 a.a.
NCBI ID   WP_167427027.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FA3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3102206..3112931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR741_RS14660 (FR741_15215) - 3103339..3105660 (+) 2322 WP_104971141.1 Tex family protein -
  FR741_RS14665 (FR741_15220) - 3105765..3106229 (-) 465 WP_005379316.1 hypothetical protein -
  FR741_RS14670 (FR741_15225) bioH 3106354..3107121 (-) 768 WP_006741796.1 pimeloyl-ACP methyl ester esterase BioH -
  FR741_RS14675 (FR741_15230) comF 3107206..3107931 (+) 726 WP_167427027.1 ComF family protein Machinery gene
  FR741_RS14680 (FR741_15235) nfuA 3108029..3108613 (+) 585 WP_005394968.1 Fe-S biogenesis protein NfuA -
  FR741_RS14685 (FR741_15240) nudE 3108790..3109359 (+) 570 WP_005394971.1 ADP compounds hydrolase NudE -
  FR741_RS14690 (FR741_15245) cysQ 3109404..3110231 (+) 828 WP_005394972.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FR741_RS14695 (FR741_15250) - 3110532..3111293 (-) 762 WP_167427028.1 type II secretion system protein N -
  FR741_RS14700 (FR741_15255) - 3111295..3111786 (-) 492 WP_012841219.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27720.94 Da        Isoelectric Point: 9.3977

>NTDB_id=378011 FR741_RS14675 WP_167427027.1 3107206..3107931(+) (comF) [Vibrio diabolicus strain FA3]
MLSHHWQNIMHRVLSSQCGLCRFPIHTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKASREQNLKGAFVLNKRPPSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=378011 FR741_RS14675 WP_167427027.1 3107206..3107931(+) (comF) [Vibrio diabolicus strain FA3]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGTTGAGCAGTCAATGCGGTCTGTGTCGGTTCCCTATTCACAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGCTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACCAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCTCAATCACAGCGTGGTAATACCAAAGCAAGCCGTGAACAAAACTTAAAAGGCGC
ATTTGTTCTCAATAAGCGACCGCCATCTTCCCACGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

48.333

99.585

0.481

Multiple sequence alignment