Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FR729_RS14850 Genome accession   NZ_CP042449
Coordinates   3166754..3167479 (-) Length   241 a.a.
NCBI ID   WP_025998648.1    Uniprot ID   A0AAW9AHG9
Organism   Vibrio alginolyticus strain FA2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3161754..3172479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR729_RS14825 (FR729_15305) - 3162907..3163398 (+) 492 WP_005383002.1 type II secretion system protein M -
  FR729_RS14830 (FR729_15310) - 3163400..3164161 (+) 762 WP_017635007.1 type II secretion system protein N -
  FR729_RS14835 (FR729_15315) cysQ 3164454..3165281 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FR729_RS14840 (FR729_15320) nudE 3165326..3165895 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  FR729_RS14845 (FR729_15325) nfuA 3166072..3166656 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  FR729_RS14850 (FR729_15330) comF 3166754..3167479 (-) 726 WP_025998648.1 amidophosphoribosyltransferase Machinery gene
  FR729_RS14855 (FR729_15335) bioH 3167564..3168331 (+) 768 WP_167415600.1 pimeloyl-ACP methyl ester esterase BioH -
  FR729_RS14860 (FR729_15340) - 3168456..3168920 (+) 465 WP_005379316.1 hypothetical protein -
  FR729_RS14865 (FR729_15345) - 3169045..3171366 (-) 2322 WP_167415601.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27767.95 Da        Isoelectric Point: 9.2064

>NTDB_id=377961 FR729_RS14850 WP_025998648.1 3166754..3167479(-) (comF) [Vibrio alginolyticus strain FA2]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKQPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=377961 FR729_RS14850 WP_025998648.1 3166754..3167479(-) (comF) [Vibrio alginolyticus strain FA2]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTACGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCACGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCAACCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473

Multiple sequence alignment