Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   FGL73_RS07615 Genome accession   NZ_CP042408
Coordinates   1599510..1600448 (-) Length   312 a.a.
NCBI ID   WP_038602246.1    Uniprot ID   -
Organism   Lactococcus lactis strain CBA3619     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594510..1605448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL73_RS07590 (FGL73_07590) frr 1594626..1595183 (-) 558 WP_004254618.1 ribosome recycling factor -
  FGL73_RS07595 (FGL73_07595) pyrH 1595396..1596112 (-) 717 WP_021464089.1 UMP kinase -
  FGL73_RS07600 (FGL73_07600) - 1596197..1596649 (-) 453 WP_012898517.1 hypothetical protein -
  FGL73_RS07605 (FGL73_07605) - 1596783..1597970 (-) 1188 WP_146978269.1 acetate kinase -
  FGL73_RS07610 (FGL73_07610) - 1598127..1599314 (-) 1188 WP_029344484.1 acetate kinase -
  FGL73_RS07615 (FGL73_07615) comYH 1599510..1600448 (-) 939 WP_038602246.1 class I SAM-dependent methyltransferase Machinery gene
  FGL73_RS07620 (FGL73_07620) - 1600536..1600787 (-) 252 WP_038602250.1 DUF3165 family protein -
  FGL73_RS07625 (FGL73_07625) typA 1600888..1602720 (-) 1833 WP_021723473.1 translational GTPase TypA -
  FGL73_RS12895 (FGL73_07630) - 1602908..1603366 (-) 459 WP_038602253.1 hypothetical protein -
  FGL73_RS07635 (FGL73_07635) - 1603368..1603778 (-) 411 WP_235589867.1 hypothetical protein -
  FGL73_RS07640 (FGL73_07640) - 1603785..1604411 (-) 627 WP_033900782.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34812.97 Da        Isoelectric Point: 4.3760

>NTDB_id=377713 FGL73_RS07615 WP_038602246.1 1599510..1600448(-) (comYH) [Lactococcus lactis strain CBA3619]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNAEAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=377713 FGL73_RS07615 WP_038602246.1 1599510..1600448(-) (comYH) [Lactococcus lactis strain CBA3619]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGATCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGTTCACAA
GTCGCACCACTTCAACCCAATCATGCTATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTGGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCTGACGTTGTTGTTAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCTTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGGAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGAGGCTAAGGCGATTTATGTTTTGAAAAAGGGACCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment