Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HPLT_RS05580 Genome accession   NC_017362
Coordinates   1153727..1154500 (+) Length   257 a.a.
NCBI ID   WP_000404454.1    Uniprot ID   -
Organism   Helicobacter pylori Lithuania75     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1148727..1159500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPLT_RS05575 (HPLT_05760) hopL 1150037..1153714 (+) 3678 WP_000591291.1 Hop family outer membrane protein HopL -
  HPLT_RS05580 (HPLT_05765) proC 1153727..1154500 (+) 774 WP_000404454.1 pyrroline-5-carboxylate reductase Machinery gene
  HPLT_RS05585 (HPLT_05770) fic 1154528..1155061 (+) 534 WP_000549913.1 protein adenylyltransferase Fic -
  HPLT_RS05590 (HPLT_05775) - 1155076..1155840 (-) 765 WP_000230677.1 TauD/TfdA family dioxygenase -
  HPLT_RS05595 (HPLT_05780) - 1155906..1156109 (-) 204 Protein_1066 hypothetical protein -
  HPLT_RS05600 (HPLT_05785) ybeY 1156205..1156633 (-) 429 WP_000889578.1 rRNA maturation RNase YbeY -
  HPLT_RS05605 (HPLT_05790) - 1156688..1157182 (-) 495 WP_000516074.1 flavodoxin -
  HPLT_RS05610 (HPLT_05795) - 1157274..1157855 (-) 582 WP_014535053.1 DedA family protein -
  HPLT_RS05615 (HPLT_05800) ccoS 1157979..1158170 (+) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HPLT_RS05620 (HPLT_05805) - 1158196..1159170 (+) 975 WP_001071040.1 NAD(P)-binding domain-containing protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28215.85 Da        Isoelectric Point: 8.3337

>NTDB_id=37768 HPLT_RS05580 WP_000404454.1 1153727..1154500(+) (proC) [Helicobacter pylori Lithuania75]
MEILQFIGYGNMAQAILEGAHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKNAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVAPSISEKALSIIESFGNCVRVGNEEQVD
ASIATNGSTLAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=37768 HPLT_RS05580 WP_000404454.1 1153727..1154500(+) (proC) [Helicobacter pylori Lithuania75]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACTGGGCGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAAACGCTATTGACATACACCAAAAATTCGTGTTTTTACTTTTTAAACCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCACTAGCTGGCGTAAATTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCCAACATTGCAAGCAAGTTCGCCCTTTCTTCTACAGCGGTGTGTGAAAAATCGGTTGCGC
CTTCAATAAGCGAGAAAGCTTTGAGTATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCACGCTCGCTTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGACGCCGGTATTAGGGA
GGGCTTGAATGCTAGAGATTCTTTAGAGTTGGTGAAAATGAGTTTTAAGGGTTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAAATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366