Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   FGL79_RS04790 Genome accession   NZ_CP042389
Coordinates   943728..944285 (+) Length   185 a.a.
NCBI ID   WP_039098349.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain CBA3617     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 938728..949285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL79_RS04765 (FGL79_04765) - 938778..939890 (+) 1113 WP_039098346.1 PIN/TRAM domain-containing protein -
  FGL79_RS04770 (FGL79_04770) cysS 940431..941837 (+) 1407 WP_069468437.1 cysteine--tRNA ligase -
  FGL79_RS04775 (FGL79_04775) - 941834..942241 (+) 408 WP_004265086.1 Mini-ribonuclease 3 -
  FGL79_RS04780 (FGL79_04780) rlmB 942228..943115 (+) 888 WP_080752752.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FGL79_RS04785 (FGL79_04785) - 943119..943652 (+) 534 WP_065825220.1 NYN domain-containing protein -
  FGL79_RS04790 (FGL79_04790) sigH 943728..944285 (+) 558 WP_039098349.1 sigma-70 family RNA polymerase sigma factor Regulator
  FGL79_RS04795 (FGL79_04795) - 944566..944883 (+) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  FGL79_RS04800 (FGL79_04800) - 944990..945349 (+) 360 WP_039098351.1 YccF domain-containing protein -
  FGL79_RS04805 (FGL79_04805) - 945500..947443 (-) 1944 WP_065825915.1 ABC-F family ATP-binding cassette domain-containing protein -
  FGL79_RS04810 (FGL79_04810) - 947639..948286 (+) 648 WP_004265080.1 redox-sensing transcriptional repressor Rex -
  FGL79_RS04815 (FGL79_04815) - 948339..948971 (-) 633 WP_069468434.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21752.94 Da        Isoelectric Point: 6.6648

>NTDB_id=377593 FGL79_RS04790 WP_039098349.1 943728..944285(+) (sigH) [Latilactobacillus curvatus strain CBA3617]
MESAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACRQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=377593 FGL79_RS04790 WP_039098349.1 943728..944285(+) (sigH) [Latilactobacillus curvatus strain CBA3617]
ATGGAATCAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTTGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTCGTCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719

Multiple sequence alignment