Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HA248_RS11535 Genome accession   NZ_CP050175
Coordinates   1448465..1449187 (-) Length   240 a.a.
NCBI ID   WP_001010368.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701590     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1443465..1454187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HA248_RS07465 (HA248_07445) - 1446039..1447205 (-) 1167 WP_033708084.1 MalY/PatB family protein -
  HA248_RS07470 (HA248_07450) - 1447213..1448307 (-) 1095 WP_000031966.1 cystathionine gamma-synthase -
  HA248_RS11535 rcrP 1448465..1449187 (-) 723 WP_001010368.1 ABC transporter ATP-binding protein Regulator
  HA248_RS07480 (HA248_07460) - 1449374..1450140 (-) 767 Protein_1471 ABC transporter ATP-binding protein -
  HA248_RS07485 (HA248_07465) amiA 1450312..1452270 (-) 1959 WP_000748873.1 peptide ABC transporter substrate-binding protein Regulator
  HA248_RS07490 (HA248_07470) - 1452474..1454096 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27287.14 Da        Isoelectric Point: 5.0452

>NTDB_id=377584 HA248_RS11535 WP_001010368.1 1448465..1449187(-) (rcrP) [Streptococcus pneumoniae strain PZ900701590]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLEQFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDESTANLDADSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEERKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=377584 HA248_RS11535 WP_001010368.1 1448465..1449187(-) (rcrP) [Streptococcus pneumoniae strain PZ900701590]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCAGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAATCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGAGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363