Detailed information NTG0377579

Bioinformatically predicted

Overview

• Name: comGB
• Type: Machinery gene
• Locus tag: FGL79_RS00130
• Genome accession: NZ_CP042389
• Coordinates: 16959..17960 (-)
• Length: 333 a.a.
• NCBI ID: WP_146954924.1
• Uniprot ID: -
• Organism: Latilactobacillus curvatus strain CBA3617
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	12004..16906	16959..17960	flank	53

Gene organization within MGE regions

Location: 12004..17960

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGL79_RS00095 (FGL79_00095)	-	12004..12555 (-)	552	WP_237023253.1	helix-turn-helix transcriptional regulator	-
FGL79_RS09885	-	12615..12779 (-)	165	WP_186738771.1	hypothetical protein	-
FGL79_RS00100 (FGL79_00100)	-	12776..13000 (-)	225	WP_146954918.1	helix-turn-helix domain-containing protein	-
FGL79_RS00105 (FGL79_00105)	-	13138..13464 (+)	327	WP_146954919.1	helix-turn-helix domain-containing protein	-
FGL79_RS00110 (FGL79_00110)	-	13467..13880 (+)	414	WP_146954920.1	ImmA/IrrE family metallo-endopeptidase	-
FGL79_RS00115 (FGL79_00115)	-	13909..14745 (+)	837	WP_146954921.1	hypothetical protein	-
FGL79_RS00120 (FGL79_00120)	-	14805..15368 (+)	564	WP_146954922.1	DUF4352 domain-containing protein	-
FGL79_RS00125 (FGL79_00125)	-	15482..16906 (+)	1425	WP_146954923.1	recombinase family protein	-
FGL79_RS00130 (FGL79_00130)	comGB	16959..17960 (-)	1002	WP_146954924.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37887.13 Da
• Isoelectric Point: 9.6278

>NTDB_id=377579 FGL79_RS00130 WP_146954924.1 16959..17960(-) (comGB) [Latilactobacillus curvatus strain CBA3617]
MKTKITVQFNTEFMLLLGRLLQNGFSLQQALEFMPIVFPTQKQWLHQVQTGLEAGKRLAPSLAAVSFPTHLVAQIELTEL
QGNLGECLLHLGQLQRIQQKRRRELVGVIAYPCFLLLFLGALIGMMQIYLFPEIAQFNPTTSATSPLQLFFRVMGTFVIM
AGGLISVYLFRWHRRPLLQRLAAAFRWPFIGKTLQAYYQYCLLFDLATCLNNGLNLAEMHQLTHRLAKTSWLVQLMQQLE
TAVQKGGTLLANLADGVFYPPELQLVLAKGSPLQQMAKEVDLLAVIKYDELQRQLKQKVNWLQPLLFILIGIIIICTYLS
ILLPLYHTMEGIS

Nucleotide

• Length: 1002 bp

>NTDB_id=377579 FGL79_RS00130 WP_146954924.1 16959..17960(-) (comGB) [Latilactobacillus curvatus strain CBA3617]
ATGAAGACTAAAATCACTGTTCAATTCAATACTGAATTTATGTTGCTGTTAGGGCGCTTACTGCAAAATGGTTTTTCTTT
ACAACAAGCACTTGAGTTCATGCCGATTGTTTTTCCGACACAAAAGCAGTGGCTGCATCAGGTGCAAACTGGGTTAGAAG
CAGGAAAACGACTAGCACCAAGCTTAGCGGCGGTTTCGTTTCCAACACACCTTGTTGCACAGATTGAATTGACTGAGTTG
CAGGGAAACTTAGGCGAGTGTTTGTTACATCTTGGCCAATTACAGCGAATTCAACAGAAACGGCGTAGAGAGTTAGTTGG
CGTAATTGCCTATCCCTGTTTTCTACTCCTTTTTCTCGGGGCGTTGATTGGGATGATGCAGATTTATCTTTTTCCGGAAA
TCGCGCAGTTTAACCCAACAACTTCGGCGACATCACCATTACAACTATTTTTTAGAGTGATGGGGACATTCGTTATTATG
GCTGGTGGTCTGATTAGTGTGTATTTATTCCGTTGGCATCGGCGACCGCTATTACAACGATTGGCGGCGGCATTTAGATG
GCCGTTCATCGGTAAAACGTTGCAGGCTTACTATCAGTATTGCTTATTATTTGATTTAGCGACTTGCCTGAATAACGGCT
TAAACTTGGCCGAAATGCATCAGCTTACACATCGTTTGGCGAAAACATCGTGGCTTGTACAATTAATGCAACAACTTGAA
ACGGCTGTCCAAAAAGGGGGCACGCTATTAGCGAACTTAGCGGATGGCGTTTTTTATCCACCTGAGCTGCAATTAGTGCT
CGCTAAGGGAAGTCCGTTACAACAGATGGCCAAGGAGGTTGATCTGCTTGCAGTCATTAAATATGATGAACTGCAACGGC
AATTGAAACAGAAGGTGAATTGGCTACAACCGCTCTTGTTTATCCTAATTGGGATCATCATTATTTGTACCTATCTCAGT
ATTTTGTTACCGCTATATCATACAATGGAGGGAATTTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (13-132)

• Type II secretion system (T2SS), protein F (T2SSF) (205-324)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGB	Latilactobacillus sakei subsp. sakei 23K	57.27	100	0.58