Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | HPLT_RS02125 | Genome accession | NC_017362 |
| Coordinates | 421031..422206 (-) | Length | 391 a.a. |
| NCBI ID | WP_000060253.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Lithuania75 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 416031..427206
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPLT_RS02090 (HPLT_02135) | - | 416357..416671 (+) | 315 | WP_000868000.1 | hypothetical protein | - |
| HPLT_RS02095 (HPLT_02140) | - | 416649..417416 (+) | 768 | WP_000602409.1 | RNA polymerase sigma factor FliA | - |
| HPLT_RS02100 (HPLT_02145) | fliM | 417409..418473 (+) | 1065 | WP_000763562.1 | flagellar motor switch protein FliM | - |
| HPLT_RS02105 (HPLT_02150) | fliY | 418477..419340 (+) | 864 | WP_001150634.1 | flagellar motor switch protein FliY | - |
| HPLT_RS02110 (HPLT_02155) | - | 419370..419906 (+) | 537 | WP_000964025.1 | YhcH/YjgK/YiaL family protein | - |
| HPLT_RS02115 (HPLT_02160) | - | 419903..420400 (+) | 498 | WP_000780278.1 | DUF2147 domain-containing protein | - |
| HPLT_RS02120 (HPLT_02165) | fur | 420420..420872 (-) | 453 | WP_000824996.1 | ferric iron uptake transcriptional regulator | - |
| HPLT_RS02125 (HPLT_02170) | rarA | 421031..422206 (-) | 1176 | WP_000060253.1 | replication-associated recombination protein A | Machinery gene |
| HPLT_RS02130 (HPLT_02175) | - | 422203..422574 (-) | 372 | WP_000332994.1 | heat shock protein transcriptional repressor HspR | - |
| HPLT_RS02135 (HPLT_02180) | - | 422584..423450 (-) | 867 | WP_000045814.1 | DnaJ family protein | - |
| HPLT_RS02140 (HPLT_02185) | - | 423618..424868 (+) | 1251 | WP_001199574.1 | hypothetical protein | - |
| HPLT_RS02145 (HPLT_02190) | - | 424973..425839 (-) | 867 | WP_080006000.1 | 5'-3' exonuclease | - |
| HPLT_RS02150 (HPLT_02195) | - | 426066..426962 (-) | 897 | WP_000697546.1 | OriC activity response regulator | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43928.42 Da Isoelectric Point: 7.5007
>NTDB_id=37756 HPLT_RS02125 WP_000060253.1 421031..422206(-) (rarA) [Helicobacter pylori Lithuania75]
MSLTSLLNPTSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILWASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCDK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSNDTHYNLTSALIKSLRGSD
ENASIYYLAHLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
MSLTSLLNPTSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILWASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCDK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSNDTHYNLTSALIKSLRGSD
ENASIYYLAHLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=37756 HPLT_RS02125 WP_000060253.1 421031..422206(-) (rarA) [Helicobacter pylori Lithuania75]
ATGAGCCTGACTTCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGCAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTTGTTTAATGCGACAGATTTCAAATTGGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTATGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGATCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAATAAGAGCGATTTAGACAGGCTTTGCGATAAG
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTACCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGTGCTAAAATAGAAGATCCTATCACTTTAGAAACGTTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCAATGATACGCATTATAACCTCACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCACTTGATTGCTGGTGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGTTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAGACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTTCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGCAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTTGTTTAATGCGACAGATTTCAAATTGGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTATGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGATCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAATAAGAGCGATTTAGACAGGCTTTGCGATAAG
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTACCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGTGCTAAAATAGAAGATCCTATCACTTTAGAAACGTTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCAATGATACGCATTATAACCTCACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCACTTGATTGCTGGTGGGGAAAACCCGGAATTTATCGCCAGAAGGTTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGTTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAGACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
38.221 |
100 |
0.407 |