Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HBA21_RS26210 Genome accession   NZ_CP050148
Coordinates   5684900..5685424 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain AA43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5679900..5690424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA21_RS26195 (HBA21_26240) aroB 5681016..5682122 (-) 1107 WP_023912813.1 3-dehydroquinate synthase -
  HBA21_RS26200 (HBA21_26245) aroK 5682172..5682690 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HBA21_RS26205 (HBA21_26250) pilQ 5682702..5684846 (-) 2145 WP_003161249.1 type 4a pilus secretin PilQ Machinery gene
  HBA21_RS26210 (HBA21_26255) comL/pilP 5684900..5685424 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HBA21_RS26215 (HBA21_26260) pilO 5685421..5686044 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HBA21_RS26220 (HBA21_26265) pilN 5686041..5686637 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HBA21_RS26225 (HBA21_26270) pilM 5686637..5687701 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HBA21_RS26230 (HBA21_26275) - 5687886..5690357 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=377264 HBA21_RS26210 WP_003095836.1 5684900..5685424(-) (comL/pilP) [Pseudomonas aeruginosa strain AA43]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=377264 HBA21_RS26210 WP_003095836.1 5684900..5685424(-) (comL/pilP) [Pseudomonas aeruginosa strain AA43]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment