Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPSA_RS04555 Genome accession   NC_017361
Coordinates   970488..970748 (-) Length   86 a.a.
NCBI ID   WP_000602759.1    Uniprot ID   -
Organism   Helicobacter pylori SouthAfrica7     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 965488..975748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSA_RS04545 (HPSA_04720) - 966050..967984 (-) 1935 WP_033620115.1 type IA DNA topoisomerase -
  HPSA_RS04550 (HPSA_04725) - 967977..970475 (-) 2499 WP_000478382.1 VirB4 family type IV secretion system protein -
  HPSA_RS04555 (HPSA_04730) comB3 970488..970748 (-) 261 WP_000602759.1 hypothetical protein Machinery gene
  HPSA_RS04560 (HPSA_04735) - 970749..971051 (-) 303 WP_000649846.1 TrbC/VirB2 family protein -
  HPSA_RS04565 (HPSA_04740) - 971041..972954 (-) 1914 WP_041201140.1 hypothetical protein -
  HPSA_RS04570 - 972966..973729 (-) 764 Protein_895 hypothetical protein -
  HPSA_RS04575 (HPSA_04755) - 973785..973955 (+) 171 Protein_896 CagY family CD-EC repeat-containing protein -
  HPSA_RS04580 (HPSA_04760) - 974421..975434 (-) 1014 WP_001213455.1 LapA family protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10170.04 Da        Isoelectric Point: 4.6082

>NTDB_id=37725 HPSA_RS04555 WP_000602759.1 970488..970748(-) (comB3) [Helicobacter pylori SouthAfrica7]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSTSFLFVWSLLYGVVLLVALVTMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=37725 HPSA_RS04555 WP_000602759.1 970488..970748(-) (comB3) [Helicobacter pylori SouthAfrica7]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATAATTTCTTTTTTGAGCACTTCTTTCTTATTTGTATGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAG
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAT
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment