Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HBA47_RS07000 Genome accession   NZ_CP050136
Coordinates   1321765..1322388 (+) Length   207 a.a.
NCBI ID   WP_019389290.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1316765..1327388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS06975 (HBA47_07005) - 1317852..1318649 (-) 798 WP_003786450.1 polyamine aminopropyltransferase -
  HBA47_RS06980 (HBA47_07010) - 1318788..1319570 (-) 783 WP_019389286.1 NUDIX domain-containing protein -
  HBA47_RS06985 (HBA47_07015) - 1319656..1320552 (+) 897 WP_019389287.1 recombination-associated protein RdgC -
  HBA47_RS06990 (HBA47_07020) - 1320585..1321031 (+) 447 WP_238373596.1 hypothetical protein -
  HBA47_RS06995 (HBA47_07025) dcd 1321041..1321607 (+) 567 WP_019389289.1 dCTP deaminase -
  HBA47_RS07000 (HBA47_07030) recR 1321765..1322388 (+) 624 WP_019389290.1 recombination mediator RecR Machinery gene
  HBA47_RS07005 (HBA47_07035) - 1322385..1323026 (+) 642 WP_019389291.1 hypothetical protein -
  HBA47_RS07010 (HBA47_07040) - 1323582..1324031 (+) 450 WP_019389293.1 GatB/YqeY domain-containing protein -
  HBA47_RS07015 (HBA47_07045) cmk 1324042..1324716 (+) 675 WP_019389294.1 (d)CMP kinase -
  HBA47_RS07020 (HBA47_07050) rpsA 1324839..1326512 (+) 1674 WP_003790677.1 30S ribosomal protein S1 -
  HBA47_RS07025 (HBA47_07055) - 1326529..1326834 (+) 306 WP_019389295.1 integration host factor subunit beta -
  HBA47_RS07030 (HBA47_07060) acpS 1326919..1327296 (-) 378 WP_019389296.1 holo-ACP synthase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22856.14 Da        Isoelectric Point: 5.2093

>NTDB_id=377059 HBA47_RS07000 WP_019389290.1 1321765..1322388(+) (recR) [Kingella kingae strain ATCC 23332]
MSDPNQIDAYSNLIHALRVLPNVGVKTAQRMAFTLLQQNRDGAAQLLSALDLALKQIHNCQLCNTFCQDDLCHTCADPRR
DSRRLMIVHMPADVSAMELARCHDGLYFVLMGQVSPTQDMDLSHIALDKLVARIAQHPVDEIIIATAFTAEGDATAYVLS
ELFANQPYKISRLARGMPLGSELEYVDAGTLAQAVYERQLLQNGESS

Nucleotide


Download         Length: 624 bp        

>NTDB_id=377059 HBA47_RS07000 WP_019389290.1 1321765..1322388(+) (recR) [Kingella kingae strain ATCC 23332]
ATGTCCGACCCCAATCAAATTGACGCTTATTCCAACCTAATCCATGCGCTGCGCGTGTTGCCCAATGTGGGCGTAAAAAC
CGCACAGCGCATGGCGTTTACCTTGCTGCAACAAAACCGCGATGGTGCAGCACAACTCTTGTCTGCGCTGGATTTGGCGT
TAAAGCAAATCCACAACTGCCAGCTATGCAACACGTTTTGCCAAGACGATTTGTGCCACACTTGCGCCGACCCGCGCCGA
GATTCGCGCCGTTTGATGATTGTGCATATGCCTGCCGATGTGTCGGCAATGGAATTGGCACGTTGTCATGACGGCTTGTA
TTTTGTGTTGATGGGACAAGTCAGCCCCACGCAAGACATGGATTTGAGCCACATTGCGCTAGACAAATTGGTCGCGCGAA
TCGCCCAACATCCTGTGGACGAAATCATCATCGCCACCGCATTCACAGCCGAGGGCGATGCCACGGCGTATGTTTTGTCG
GAATTGTTTGCCAATCAACCATATAAAATCAGTCGTTTAGCGCGTGGTATGCCACTGGGCAGCGAGCTGGAATATGTGGA
CGCTGGCACGTTGGCGCAGGCGGTATATGAACGCCAGTTGCTGCAAAACGGAGAGTCGTCATGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(43-81)

Toprim domain (Toprim_4)

(84-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.104

92.754

0.372