Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   HBA50_RS08445 Genome accession   NZ_CP050133
Coordinates   1701310..1703670 (+) Length   786 a.a.
NCBI ID   WP_045498523.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1696310..1708670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS08420 (HBA50_08420) comA 1696517..1698670 (-) 2154 WP_045498536.1 peptide cleavage/export ABC transporter ComA Regulator
  HBA50_RS08425 (HBA50_08425) - 1699022..1699246 (-) 225 WP_235285264.1 hypothetical protein -
  HBA50_RS08430 (HBA50_08430) - 1699315..1699488 (-) 174 WP_005592399.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  HBA50_RS08435 (HBA50_08435) rnhC 1699714..1700598 (+) 885 WP_045498529.1 ribonuclease HIII -
  HBA50_RS08440 (HBA50_08440) lepB 1700602..1701234 (+) 633 WP_045498526.1 signal peptidase I -
  HBA50_RS08445 (HBA50_08445) recD/recD2/recDB 1701310..1703670 (+) 2361 WP_045498523.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HBA50_RS08450 (HBA50_08450) - 1703733..1704377 (-) 645 WP_045498520.1 TetR/AcrR family transcriptional regulator -
  HBA50_RS08455 (HBA50_08455) - 1704749..1705075 (-) 327 WP_045498519.1 hypothetical protein -
  HBA50_RS08460 (HBA50_08460) dinB 1705291..1706355 (-) 1065 WP_045498518.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88652.43 Da        Isoelectric Point: 4.5410

>NTDB_id=376946 HBA50_RS08445 WP_045498523.1 1701310..1703670(+) (recD/recD2/recDB) [Streptococcus cristatus ATCC 51100]
MTEFYFSGTIERIIFENPSNFFRILLLDIQDTDCEDFDDFEIIVTGTMADIIEGEDYTFWGNLVQHPKYGQQLKISRYER
AKPTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDETIDKILAEPEKLKEITGLSAKNREAFVAKLQLNYGTELVLAKLAA
YGIPNKLAFQIQETYKEETLEIVKQYPYRLVEDIQGIGFKIADQLAQQLGIESDAPERFRAGLIHTLLTQSMETGDTYLE
ARDLLAHTIDLLESSRQVELDPSLVADELAHLIEEDKVQNVETKIFENSLFFAEEGICSNLIRLLEKGHQDRFEEEKILD
AISQAEDDLGIHYDQIQKQAIFDAITQKVFILTGGPGTGKTTVINGIISVYSQLRELDLKKKADLPILLAAPTGRAARRM
NELTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNTKLLLVGDAEQLPSVSPGQVLA
DLLQIPSIPQTKLEKIYRQSQDSTIVTLASQIQKGLLPEDFTEKKADRSYFEARNEHIPPMIERIASAAIRSGIPAQDVQ
VLAPMYRGQAGIDQINNLMQNLINPVEKDQLTFEAPDCQYRQGDRVIHLVNDAESNVFNGDLGYIVDLLPAKYTESKQDE
LTINFDGNEISYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITRSSHRMLQRNLVYTAITRAKSKLILLGEKSAFDYAV
KNTGTARKTYLIERFGDVESPQEIIHNPVDNSKSPVENYALTEENFQKIDPMIGITEEDIHSIFGE

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=376946 HBA50_RS08445 WP_045498523.1 1701310..1703670(+) (recD/recD2/recDB) [Streptococcus cristatus ATCC 51100]
ATGACAGAATTTTATTTTTCAGGCACAATTGAGCGCATCATTTTTGAAAATCCCAGCAATTTCTTTCGAATCCTCCTCTT
GGATATCCAAGACACAGATTGTGAAGATTTTGATGATTTTGAGATTATCGTGACCGGAACCATGGCCGATATTATCGAAG
GCGAGGATTATACATTTTGGGGCAATCTAGTTCAGCATCCCAAGTACGGACAGCAGCTAAAAATTTCCCGCTATGAGAGG
GCAAAACCGACTAGTAAGGGGCTGGTTAAATATTTTTCCAGTGACCACTTTAAGGGTATCGGTGTCAAGACAGCCCAAAA
AATTGTGGATCTTTATGGGGACGAAACCATTGATAAGATTTTAGCTGAGCCAGAAAAACTCAAAGAAATCACTGGCCTTT
CCGCCAAAAATCGAGAAGCCTTTGTTGCCAAACTGCAACTCAACTATGGAACAGAGCTGGTCTTAGCTAAGCTGGCTGCC
TACGGCATTCCCAACAAACTAGCCTTTCAGATTCAGGAAACCTACAAGGAAGAAACGCTTGAAATCGTCAAGCAGTATCC
CTACCGGCTAGTTGAAGATATCCAAGGTATCGGTTTTAAAATTGCTGACCAGCTGGCTCAGCAGTTGGGAATTGAAAGTG
ATGCCCCTGAGCGTTTTCGGGCTGGCTTGATTCATACCCTCCTGACCCAGTCCATGGAAACCGGAGATACCTATTTGGAA
GCTAGAGACCTATTGGCTCATACGATTGATCTTCTGGAGAGTTCGCGTCAAGTAGAGCTAGACCCTAGTCTGGTAGCCGA
TGAATTGGCTCACCTGATTGAAGAAGACAAAGTCCAAAATGTTGAGACTAAGATTTTTGAAAACAGTCTCTTCTTTGCCG
AGGAAGGCATCTGCAGCAATCTAATTCGCCTTTTGGAAAAAGGCCATCAGGATCGCTTTGAAGAAGAGAAAATCCTCGAT
GCCATAAGCCAGGCTGAAGATGACCTAGGCATCCACTATGATCAGATTCAGAAGCAGGCCATTTTCGACGCTATCACACA
AAAAGTCTTTATCCTGACGGGTGGACCAGGAACAGGAAAAACAACCGTCATCAATGGTATCATTTCCGTCTATAGCCAGC
TTCGAGAGTTGGATTTGAAAAAGAAGGCAGATTTGCCCATTCTCCTTGCTGCTCCGACTGGTCGAGCTGCTCGCCGTATG
AACGAACTGACTGGACTACCCAGCGCTACGATCCACCGACATCTCGGTATGACTGGAGATGATGATACCAGTCATTTGGA
TGATTATCTGGATGCTGATTTTATCATTGTTGATGAGTTCTCCATGGTGGACACTTGGCTGGCCAATCAGCTCCTCAGTA
ATATCTCCTCCAATACCAAACTGCTTTTGGTGGGCGATGCAGAGCAGTTACCCTCTGTCAGTCCTGGGCAGGTATTAGCT
GACCTACTGCAAATACCGAGTATCCCCCAAACCAAGCTGGAAAAAATTTACCGTCAGAGCCAAGATTCGACTATTGTTAC
TCTGGCTAGTCAAATCCAAAAGGGACTACTGCCAGAAGATTTTACTGAAAAAAAAGCGGATCGATCTTATTTTGAAGCTC
GAAATGAACACATCCCGCCCATGATTGAACGAATTGCCAGCGCAGCTATTCGCAGTGGCATCCCAGCTCAAGATGTGCAA
GTGCTGGCTCCCATGTACCGCGGACAGGCCGGTATTGACCAGATAAACAACCTCATGCAAAATCTGATCAATCCTGTGGA
AAAAGATCAGCTGACCTTTGAGGCACCTGACTGCCAATATCGACAAGGAGACCGGGTCATCCACTTGGTCAATGATGCAG
AAAGCAATGTCTTTAACGGTGACTTAGGCTACATCGTAGACCTGCTCCCAGCTAAGTACACCGAGTCCAAGCAGGACGAA
TTAACCATCAACTTTGACGGCAATGAAATTAGCTACCAGCGCAGCGAATGGTACAAAATTCGCCTAGCCTATGCCATGAG
CATCCACAAGTCTCAAGGTAGCGAGTTTCCCGTGGTTATCCTTCCCATTACCCGAAGCAGCCACCGCATGCTCCAGCGCA
ATCTGGTCTACACAGCTATTACCCGAGCCAAGAGCAAACTGATCCTACTTGGGGAAAAGTCAGCCTTTGACTACGCTGTA
AAGAATACTGGAACGGCCCGCAAAACCTATCTGATTGAACGTTTTGGGGATGTAGAATCCCCTCAAGAAATTATCCACAA
TCCTGTGGATAACAGCAAATCGCCTGTGGAAAACTATGCCCTAACAGAGGAAAACTTCCAGAAAATTGATCCTATGATTG
GGATAACAGAAGAAGATATTCACAGTATTTTTGGAGAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-238)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

AAA domain (AAA_30)

(333-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

40.964

95.038

0.389