Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HBA50_RS04070 Genome accession   NZ_CP050133
Coordinates   819669..821441 (+) Length   590 a.a.
NCBI ID   WP_045496844.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 814669..826441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS04045 (HBA50_04045) cas6 815136..815864 (+) 729 WP_166492632.1 CRISPR-associated endoribonuclease Cas6 -
  HBA50_RS04050 (HBA50_04050) - 815942..816100 (+) 159 WP_160290160.1 hypothetical protein -
  HBA50_RS04060 (HBA50_04060) cas1 816219..816707 (+) 489 Protein_799 CRISPR-associated endonuclease Cas1 -
  HBA50_RS04065 (HBA50_04065) - 817923..819659 (+) 1737 WP_045496841.1 ABC transporter ATP-binding protein -
  HBA50_RS04070 (HBA50_04070) rcrQ 819669..821441 (+) 1773 WP_045496844.1 ABC transporter ATP-binding protein Regulator
  HBA50_RS04075 (HBA50_04075) - 821533..822216 (-) 684 WP_045496846.1 B3/4 domain-containing protein -
  HBA50_RS04080 (HBA50_04080) - 822273..823286 (-) 1014 WP_045496848.1 YdcF family protein -
  HBA50_RS04085 (HBA50_04085) brnQ 823517..824848 (+) 1332 WP_045497698.1 branched-chain amino acid transport system II carrier protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 66176.61 Da        Isoelectric Point: 5.2502

>NTDB_id=376902 HBA50_RS04070 WP_045496844.1 819669..821441(+) (rcrQ) [Streptococcus cristatus ATCC 51100]
MKENSFVRLWGYLKVYKAAVLLAVFLKIVSVVMSVLEPFVLGLAITELTQNLLDMAKGVPGAAINSSYVAWIMLLYFIRA
LFYEIGAYFSNYFMTNAVQSTVRDMRNELSRKINRIPVSYFDKHQFGDLIGRFTSDVETVSNALQQSFLQVVNAVMTLIL
VIGMVLYLNIQLALIVIVSIPLTYLGARFILKKSQPYFKQQADVLGAMNGFVQENLSGFNVLKLYGREETSAEDFRAITQ
NLQEVGFKASFISGLMMPVLNGISDLTYLIVALVGGLQVIAGQLTIGNMQAFVQYVWQVNQPIQNLTQLAGQLQSAKSSL
DRIFQILDEPDEVMDNTVRLDKDLTGQVSFKDVDFQYVADKPLIRNFNLEVQPGEMVAIVGPTGAGKTTLINLLMRFYDV
TKGSISVDGHDIRQLSRQDYRKQFGMVLQDAWLYEGTIKENLRFGNLDATDEEIVEAAKSANVDHFIRTLPGGYNMEMNQ
ESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKTLMQGRTSFVIAHRLSTIQEADKILVLKDGQI
IEQGNHESLLADKGFYHDLYMSQFSDKKED

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=376902 HBA50_RS04070 WP_045496844.1 819669..821441(+) (rcrQ) [Streptococcus cristatus ATCC 51100]
ATGAAAGAAAATAGTTTTGTCCGCTTATGGGGCTATCTAAAAGTCTATAAAGCCGCCGTGCTTCTTGCAGTCTTCCTCAA
GATTGTCAGTGTGGTCATGAGTGTCCTAGAGCCTTTTGTCCTAGGACTTGCCATCACAGAGCTGACACAAAATCTGCTGG
ATATGGCCAAGGGAGTACCCGGTGCAGCCATCAATAGCAGCTATGTGGCTTGGATTATGCTGCTTTACTTTATTCGTGCC
CTCTTTTATGAGATTGGTGCTTATTTCTCTAACTATTTTATGACCAATGCTGTGCAGAGCACCGTTCGCGATATGCGCAA
TGAGCTCAGTCGTAAAATCAATCGAATTCCTGTTTCCTACTTTGACAAGCACCAGTTCGGTGATCTGATTGGGCGCTTCA
CCAGTGATGTGGAGACCGTCTCAAATGCACTTCAACAAAGTTTTTTGCAGGTGGTCAATGCCGTCATGACCCTTATTTTG
GTCATTGGGATGGTTCTTTATCTGAATATCCAGCTGGCCTTGATCGTTATCGTCAGCATTCCTCTGACTTATCTTGGAGC
TAGATTCATCCTCAAAAAATCCCAGCCCTACTTTAAGCAACAGGCAGATGTTTTGGGTGCTATGAATGGCTTCGTCCAAG
AAAATCTGTCTGGCTTCAATGTTCTCAAGCTTTATGGTCGGGAAGAGACCTCGGCTGAGGATTTTCGAGCTATTACTCAA
AATTTGCAGGAAGTCGGCTTTAAAGCCAGCTTTATCTCAGGACTCATGATGCCTGTTCTTAATGGGATTTCAGATTTGAC
CTATCTCATCGTGGCTCTGGTAGGCGGTTTGCAGGTTATTGCTGGTCAGCTGACCATCGGGAATATGCAGGCATTTGTCC
AGTACGTCTGGCAGGTCAATCAGCCTATTCAAAACCTTACCCAGCTGGCAGGTCAGCTCCAGAGCGCTAAGTCTTCGCTG
GATCGGATTTTCCAGATTTTGGATGAACCAGATGAAGTCATGGATAATACTGTCCGGCTAGATAAGGACTTGACTGGTCA
GGTCAGCTTCAAAGATGTAGACTTCCAATATGTGGCAGATAAGCCGCTGATTCGCAACTTTAATCTGGAAGTTCAGCCAG
GTGAAATGGTGGCTATTGTCGGGCCGACTGGAGCTGGTAAGACGACCTTGATCAATCTTCTCATGCGTTTCTACGATGTG
ACCAAGGGCTCTATCAGCGTGGATGGCCACGATATCCGCCAGCTATCCCGCCAAGACTATCGTAAGCAATTTGGTATGGT
TCTGCAGGATGCTTGGCTTTATGAAGGGACTATCAAGGAAAATCTCCGCTTTGGTAACCTTGATGCTACCGATGAGGAGA
TTGTGGAAGCAGCCAAATCAGCCAATGTGGATCACTTTATTCGTACCTTGCCGGGTGGCTACAATATGGAAATGAATCAG
GAGTCTAGCAATATTTCGCTGGGTCAAAAACAACTTCTGACGATCGCACGGGCGCTCTTGGCCGATCCTAAGATTCTAAT
TTTGGACGAGGCGACATCCTCAGTGGACACTCGTTTGGAGCTGTTGATTCAGAAGGCCATGAAAACTCTGATGCAGGGGC
GGACGAGCTTTGTCATTGCTCACCGTTTGTCCACTATCCAAGAAGCAGACAAGATTTTGGTGCTCAAGGATGGACAAATC
ATTGAGCAGGGCAATCACGAGTCGCTGCTGGCTGACAAGGGCTTCTATCATGACTTATATATGAGTCAATTTTCAGATAA
GAAAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-302)

ABC transporter (ABC_tran)

(365-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.993

100

0.441