Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HBA50_RS01685 Genome accession   NZ_CP050133
Coordinates   335220..336008 (+) Length   262 a.a.
NCBI ID   WP_005591692.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 330220..341008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS01675 (HBA50_01675) - 333081..333536 (-) 456 WP_005591690.1 universal stress protein -
  HBA50_RS01680 (HBA50_01680) - 333794..335008 (+) 1215 WP_045500585.1 pyridoxal phosphate-dependent aminotransferase -
  HBA50_RS01685 (HBA50_01685) codY 335220..336008 (+) 789 WP_005591692.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HBA50_RS01690 (HBA50_01690) - 336008..336565 (+) 558 WP_045500587.1 cysteine hydrolase family protein -
  HBA50_RS01695 (HBA50_01695) aspS 336875..338611 (+) 1737 WP_045500590.1 aspartate--tRNA ligase -
  HBA50_RS01700 (HBA50_01700) gatC 338814..339116 (+) 303 WP_005591696.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  HBA50_RS01705 (HBA50_01705) gatA 339116..340582 (+) 1467 WP_045500592.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29767.24 Da        Isoelectric Point: 5.4969

>NTDB_id=376874 HBA50_RS01685 WP_005591692.1 335220..336008(+) (codY) [Streptococcus cristatus ATCC 51100]
MAKLLEKTRKITSILKRSEEQLQEELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNNDRVEAFFQDKTFPKEYV
QEANMVYETEANLPVTHDLTIFPVETKDEFPDGLTTIAPIHVSGIRLGSLIIWRNDKEFLDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=376874 HBA50_RS01685 WP_005591692.1 335220..336008(+) (codY) [Streptococcus cristatus ATCC 51100]
ATGGCAAAACTATTAGAAAAAACAAGGAAGATTACTTCTATCTTGAAACGTTCAGAGGAGCAACTTCAGGAGGAACTTCC
TTACAATGCGATCACTCGCCAGCTTGCTGACATTATTCATTGCAATGCCTGTATCATCAACAGCAAGGGCCGTCTCTTGG
GCTATTTCATGCGCTACAAGACAAATAATGATCGTGTAGAAGCCTTTTTCCAAGACAAGACTTTCCCCAAAGAATATGTC
CAAGAAGCAAACATGGTGTATGAGACGGAGGCTAATCTGCCTGTAACTCACGATTTGACCATTTTCCCAGTGGAAACCAA
GGATGAATTTCCAGATGGTTTGACTACTATCGCACCGATTCATGTTTCAGGAATTCGCTTGGGTTCGCTGATTATCTGGC
GCAATGACAAGGAATTTTTGGATGACGACCTGATTCTGGTCGAGATTGCTAGCACGGTGGTCGGTATCCAGCTGCTTAAT
TTCCAGCGGGAAGAGGATGAGAAAAATATCCGTCGTCGGACAGCTGTGACCATGGCAGTCAATACCCTGTCTTACTCAGA
GCTAAGAGCTGTTTCAGCTATTCTGGGCGAGCTCAATGGCAATGAAGGCCAACTGACGGCTTCGGTCATTGCTGACCGCA
TCGGGATTACTCGTTCAGTCATTGTCAATGCCTTGCGTAAGCTGGAAAGTGCGGGGATTATTGAAAGCCGCTCGCTGGGG
ATGAAGGGAACTTATCTGAAAGTACTGATTCCAGATGTTTTTGAGGAAATTAAAAAGAGGGACTATTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

50.813

93.893

0.477