Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HAP33_RS23490 Genome accession   NZ_CP050054
Coordinates   5091271..5091696 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain LIUYANG-A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5086271..5096696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAP33_RS23475 pilX 5086841..5087428 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  HAP33_RS23480 pilY1 5087440..5090925 (+) 3486 WP_003115287.1 type 4a pilus biogenesis protein PilY1 -
  HAP33_RS23485 pilY2 5090927..5091274 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  HAP33_RS23490 comF 5091271..5091696 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  HAP33_RS23495 ispH 5091743..5092687 (-) 945 WP_003112824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HAP33_RS23500 fkpB 5092773..5093213 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  HAP33_RS23505 lspA 5093206..5093715 (-) 510 WP_003112823.1 signal peptidase II -
  HAP33_RS23510 ileS 5093708..5096539 (-) 2832 WP_003112822.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=376724 HAP33_RS23490 WP_003094721.1 5091271..5091696(+) (comF) [Pseudomonas aeruginosa strain LIUYANG-A]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=376724 HAP33_RS23490 WP_003094721.1 5091271..5091696(+) (comF) [Pseudomonas aeruginosa strain LIUYANG-A]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383