Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPB8_RS07615 Genome accession   NC_014256
Coordinates   1577779..1578042 (-) Length   87 a.a.
NCBI ID   WP_000584958.1    Uniprot ID   D7FG60
Organism   Helicobacter pylori B8     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1572779..1583042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB8_RS07605 (HPB8_1607) - 1573761..1575101 (-) 1341 WP_001879388.1 COG3014 family protein -
  HPB8_RS07610 (HPB8_1608) comB4 1575414..1577777 (-) 2364 WP_000890512.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPB8_RS07615 (HPB8_1609) comB3 1577779..1578042 (-) 264 WP_000584958.1 hypothetical protein Machinery gene
  HPB8_RS07620 (HPB8_1610) comB2 1578042..1578323 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPB8_RS07625 (HPB8_1611) - 1578468..1579295 (-) 828 WP_001154960.1 DUF5718 family protein -
  HPB8_RS07630 (HPB8_1612) - 1579385..1580437 (-) 1053 WP_000721172.1 MnmA/TRMU family protein -
  HPB8_RS07635 (HPB8_1613) dnaG 1580434..1582113 (-) 1680 WP_000601628.1 DNA primase -
  HPB8_RS07645 (HPB8_1614) groES 1582399..1582755 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10066.12 Da        Isoelectric Point: 9.7585

>NTDB_id=37666 HPB8_RS07615 WP_000584958.1 1577779..1578042(-) (comB3) [Helicobacter pylori B8]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKYYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=37666 HPB8_RS07615 WP_000584958.1 1577779..1578042(-) (comB3) [Helicobacter pylori B8]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATATTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D7FG60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989

Multiple sequence alignment