Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPB8_RS07275 Genome accession   NC_014256
Coordinates   1499917..1501230 (-) Length   437 a.a.
NCBI ID   WP_000653577.1    Uniprot ID   -
Organism   Helicobacter pylori B8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1494917..1506230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB8_RS07245 (HPB8_1526) nadC 1495380..1496201 (-) 822 WP_000404087.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPB8_RS07250 (HPB8_1527) nadA 1496201..1497211 (-) 1011 WP_001141826.1 quinolinate synthase NadA -
  HPB8_RS07255 (HPB8_1528) - 1497201..1498004 (-) 804 WP_000226177.1 phosphatidylserine decarboxylase -
  HPB8_RS07260 (HPB8_1529) - 1497998..1498504 (-) 507 WP_000953109.1 DUF6115 domain-containing protein -
  HPB8_RS07265 (HPB8_1530) - 1498517..1499011 (-) 495 WP_001861728.1 hypothetical protein -
  HPB8_RS07270 (HPB8_1531) mqnP 1499004..1499846 (-) 843 WP_231844699.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPB8_RS07275 (HPB8_1532) comEC/comE3 1499917..1501230 (-) 1314 WP_000653577.1 ComEC/Rec2 family competence protein Machinery gene
  HPB8_RS07280 (HPB8_1533) - 1501227..1502693 (-) 1467 WP_000349737.1 replicative DNA helicase -
  HPB8_RS07285 (HPB8_1534) - 1502704..1504104 (-) 1401 WP_000954011.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPB8_RS07290 (HPB8_1535) crdS 1504107..1505309 (-) 1203 WP_080006218.1 copper-sensing histidine kinase CrdS -
  HPB8_RS07295 (HPB8_1536) crdR 1505275..1505916 (-) 642 WP_001169788.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50111.94 Da        Isoelectric Point: 9.8368

>NTDB_id=37658 HPB8_RS07275 WP_000653577.1 1499917..1501230(-) (comEC/comE3) [Helicobacter pylori B8]
MKDKTFQGAFELLSTPKEYLLCGVFLSLLLTLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSYWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQAISLS
ALVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNVLSMPLTIPTISIPSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=37658 HPB8_RS07275 WP_000653577.1 1499917..1501230(-) (comEC/comE3) [Helicobacter pylori B8]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTGCTGTGTGGGGTGTTTTTAAG
CCTTTTGTTAACACTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCCTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACGCGAAAACAAGATTTTAAATCGTATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTATTCATAGGGGATAGCCTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTGGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTTTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTACTGCTATTAGATTTTTTACCCTCTTTTTTTAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCTTAAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATTT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATAATG
TTCTAAGCATGCCTTTAACCATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952

Multiple sequence alignment