Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FQV73_RS02675 Genome accession   NZ_CP042271
Coordinates   557926..558705 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain LPL061     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 552926..563705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQV73_RS02655 trmFO 553613..554920 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FQV73_RS02660 xerC 554990..555907 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  FQV73_RS02665 hslV 555923..556468 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  FQV73_RS02670 hslU 556485..557888 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  FQV73_RS02675 codY 557926..558705 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FQV73_RS02680 flgB 559059..559448 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  FQV73_RS02685 flgC 559448..559900 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  FQV73_RS02690 fliE 559911..560231 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  FQV73_RS02695 fliF 560274..561884 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  FQV73_RS02700 fliG 561897..562913 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  FQV73_RS02705 fliH 562906..563661 (+) 756 WP_025851275.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=376517 FQV73_RS02675 WP_003154263.1 557926..558705(+) (codY) [Bacillus velezensis strain LPL061]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=376517 FQV73_RS02675 WP_003154263.1 557926..558705(+) (codY) [Bacillus velezensis strain LPL061]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment